PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000210119
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TALE
Protein Properties Length: 650aa    MW: 72795.5 Da    PI: 6.317
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000210119genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.8e-094104422254
                    SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +yp+ +e+  LA+++gLt +qV +WF N R +
  MDP0000210119 410 LPYPKDSEKIMLARQTGLTRNQVANWFINARVR 442
                    79*****************************88 PP
2BELL112.91.7e-36268339172
           BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    erq++q+kk+kLls+l+eVd+rYkqy++q+q+v+s F+ vag g+a pYt+lAl+aiS hFr+L+dai++qi
  MDP0000210119 268 ERQDMQNKKTKLLSMLNEVDQRYKQYYHQMQAVVSYFDKVAGNGAAGPYTALALHAISCHFRSLRDAIKGQI 339
                    799*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.6E-52189337IPR006563POX domain
PfamPF075263.2E-47195335IPR006563POX domain
PROSITE profilePS5007111.742383446IPR001356Homeobox domain
SMARTSM003895.4E-9386450IPR001356Homeobox domain
CDDcd000862.08E-11386447No hitNo description
SuperFamilySSF466895.56E-16387453IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-26389450IPR009057Homeodomain-like
PfamPF059206.4E-16403442IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MATYFQNLGN QNLLNPYQGD PEPPGNMMMY LNQASYAAGS YSEVLSGGNL PPQKYADSEG  60
VRNEMMFIPP TSDQVRDCDI GGNSLIGKHG IQDHGLSLSL STQIPQTVSL PSFQYQYPNT  120
SLSSVLSNAP VLGKGDEYNQ SEEFRNFESL ASGLYGGGHE AVKTQAFYNP LCSSESKEMR  180
SEAYLYESLG SANTMLSSKY LKAAQQLLDE VVNVRKALKQ SRLNKNQSFK RSGLGGSKET  240
DGSDQHLRRS SDPSESSAVS SIELSPSERQ DMQNKKTKLL SMLNEVDQRY KQYYHQMQAV  300
VSYFDKVAGN GAAGPYTALA LHAISCHFRS LRDAIKGQIQ VTRKRLGEQD NSSDGQGSVI  360
PRLRYVDQQL RQQRAFQQLG GLQHAWRPQR GLPESSVTIL RAWLFEHFLL PYPKDSEKIM  420
LARQTGLTRN QVANWFINAR VRLWKPMIED IYKEEFGDLD MDSKSSPENA LKEEARVDFS  480
ASEDRKEELH ESLISATADS IEPGKLHDSK SGHHSTCDMP RLDHFTVGSD VSLALELRHC  540
EEHDGFPPST GSHVRVNDAV TSLDCHYEDP EQQHLIQDYR LQILGGKRPQ AMIIEKQNAC  600
FAALQAGVDV DVWMTLFYIT HVYPQEECCT CSVVHKNVFL TRAVKSVVYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A6e-15392449158Homeobox protein Meis1
4xrs_B6e-15392449158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008388024.10.0BEL1-like homeodomain protein 3
RefseqXP_008388026.10.0BEL1-like homeodomain protein 3
RefseqXP_017192095.10.0BEL1-like homeodomain protein 3
SwissprotQ9FWS91e-119BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBLA0A498HWF90.0A0A498HWF9_MALDO; Uncharacterized protein
STRINGXP_008388024.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75410.21e-104BEL1-like homeodomain 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]