PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000209939

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB

Protein Properties

Length: 247aa MW: 27887.9 Da PI: 5.2245

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000209939	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.5	1.1e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed+ l+d+++ +G g W+ +++ g++R++k+c++rw++yl MDP0000209939 14 RGPWTALEDKMLADYIQAHGEGKWSNVPKQAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	40.6	5.8e-13	70	111	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T++E++l+++++k+lG++ W++Ia +++ gRt ++ ++w++ MDP0000209939 70 ITKDEEDLIIRLHKLLGNR-WSLIAGRIP-GRTKDEIENYWHSN 111 59***************.*****.*********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.4E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.19	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	1.76E-27	11	108	IPR009057	Homeodomain-like
SMART	SM00717	2.8E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.36E-9	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.5E-19	65	115	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.887	66	116	IPR017930	Myb domain
SMART	SM00717	2.9E-10	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	8.5E-12	70	111	IPR001005	SANT/Myb domain
CDD	cd00167	5.56E-9	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MGRNPCCSKE GVKRGPWTAL EDKMLADYIQ AHGEGKWSNV PKQAGLKRCG KSCRLRWLNY 60 LRPSIKXGDI TKDEEDLIIR LHKLLGNRWS LIAGRIPGRT KDEIENYWHS NLCKKQHEDH 120 ILSCRPSAST EIADTVQQSK VEVQLENDPS CNNNFALGSS MLCNLTDIXA EESETSSGSL 180 LSASKSREED RSSCWENILM EDFHTREMSL SEFLDTDFTK LSNVFGFGMC DVMSNEVLLE 240 GESGYGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	9e-24	14	115	27	127	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.15327	0.0	fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008347563.2	0.0	transcription repressor MYB6-like
TrEMBL	A0A498J8L7	1e-174	A0A498J8L7_MALDO; Uncharacterized protein
STRING	XP_008377821.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	1e-56	myb domain protein 5

Link Out ? help Back to Top
Phytozome	MDP0000209939