PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000209929
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 287aa    MW: 31930.5 Da    PI: 8.2459
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000209929genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.72.6e-1094118126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +kt+lC+ f++ GtC+y  +C+FaH+
  MDP0000209929  94 FKTKLCCKFRA-GTCPYVTNCNFAHS 118
                    69*********.*************8 PP
2zf-CCCH192.6e-06167192126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    yk + C+ f+    C+yGd+C+F H+
  MDP0000209929 167 YKGRHCKKFYTEEGCPYGDNCTFLHD 192
                    78888********************7 PP
3zf-CCCH42.97.8e-14227252126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +kt+ C+ +  tG+C++G++C+FaHg
  MDP0000209929 227 WKTRVCNKWELTGYCPFGSKCHFAHG 252
                    8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.4E-891124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-1491126IPR000571Zinc finger, CCCH-type
SMARTSM003560.00393119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.13193120IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-794118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-10164194IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-8165194IPR000571Zinc finger, CCCH-type
SMARTSM003560.058166193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23166194IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-15223253IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-9224254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.234226254IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-9226253IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-11227252IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDYGRESNVV HVITGNSGGG GGDIWSSDQA VWATEDEYRV WNNGDALADT MSNSNYDQRQ  60
SQSRSGSEPP NKKSRNSQDA TSSNRSKAIG KMFFKTKLCC KFRAGTCPYV TNCNFAHSIE  120
ELRRPPPNWQ EIVAAHEEEK AVSSEPREEY QIPIVSTGYG VETPRSYKGR HCKKFYTEEG  180
CPYGDNCTFL HDEQSKNRES VAISLGPGGY GGGAAAANGA SNKPSNWKTR VCNKWELTGY  240
CPFGSKCHFA HGVAGMIYIL FHRASRLAYA SILGLKKYWF QFLYMDA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.81750.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431652e-34AC243165.1 Gossypium hirsutum clone MX179E13-jom, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340182.11e-171PREDICTED: zinc finger CCCH domain-containing protein 56-like
SwissprotQ84UQ38e-93C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A498HM300.0A0A498HM30_MALDO; Uncharacterized protein
STRINGXP_008372331.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.12e-90C3H family protein