PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000209860
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 312aa    MW: 33359.9 Da    PI: 8.0973
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000209860genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.4e-091737323
                   S---SGGGGTS--TTTTT-SS CS
        zf-CCCH  3 telCrffartGtCkyGdrCkF 23
                     +C f++++G+Ck+G++CkF
  MDP0000209860 17 VQPCTFYLQNGQCKFGSTCKF 37
                   579****************** PP
2zf-CCCH28.33e-09167189224
                    -S---SGGGGTS--TTTTT-SS- CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFa 24 
                    ++ +C+++++tG+Ck+G +CkF+
  MDP0000209860 167 GENECSYYLKTGQCKFGITCKFH 189
                    5679******************7 PP
3zf-CCCH35.41.8e-11288310426
                    ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     +C+++++tG CkyG++C+++H+
  MDP0000209860 288 LECQYYLKTGDCKYGPSCRYHHP 310
                    58********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.921442IPR000571Zinc finger, CCCH-type
SMARTSM003560.141441IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-61737IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-41837IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.296166193IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6167189IPR000571Zinc finger, CCCH-type
SMARTSM003562.2167192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.08284312IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5284311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6288311IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-9288310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4290309IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MSYSMEKINV LLFGRGVQPC TFYLQNGQCK FGSTCKFDRP VQTMRYNLSA SSLVDILVVQ  60
YPVGSVLPTV APSSSSLDLR PRSKCGNWGL RAANRTRRDP ACPTVSTTCE PGSVDTVVGA  120
GTTILAIVLR AVGNVVLVTT AWILLVVAAV RATGDYPERV GEPVCQGENE CSYYLKTGQC  180
KFGITCKFHY PQPAGTTIPA SAPQFYPSVQ SPVPLAEQYG GGHPPAPLSP VPSPGAQLTV  240
GATSLYGVTQ LSSPTDGLAS PYTSISSSVG PSSSNRSEQV FPERPGELEC QYYLKTGDCK  300
YGPSCRYHHP WD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.122111e-122fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017183274.11e-107zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W916e-56C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A314XWJ53e-82A0A314XWJ5_PRUYE; Zinc finger CCCH domain-containing protein 32
STRINGXP_009378917.14e-85(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.34e-49C3H family protein