PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000209804
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SRS
Protein Properties Length: 430aa    MW: 46002.2 Da    PI: 7.0826
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000209804genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70296.26.4e-3024035647153
         DUF702  47 akrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeela 131
                    +   erq + aaa   a +++ +++++k++r l  ++q+++s+t++s+ +++++ +tss          lP +v+++avf+cvrv++v+dge+e+a
  MDP0000209804 240 SASEERQLMSAAAGGGAGSNSgSTSSAKKPR-LIGASQTTTSHTSTSNITPPRSYDTSSshqdagfkdpLPGQVRAPAVFKCVRVTAVEDGEDEYA 334
                    5667888888888888888773455555555.56999999*****************999************************************ PP

         DUF702 132 YqtavsigGhvfkGiLydqGle 153
                    Yq++v+i+GhvfkG LydqG++
  MDP0000209804 335 YQAVVKINGHVFKGXLYDQGVD 356
                    ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.3E-25251356IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016245.9E-28308355IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MKLHALPDSE LSDYWRERER EGGAHLLLSW LSRKHVEEGF LGGERELKKK IKRSSSVLLA  60
QREREREEEE EKKKRRKEEE KKREWMDMDP QAEAEAPSPS VSISDQKRLP SDSGAFADWV  120
GSSSSNNAAA TGRSTTHHPD IDVLSLGFNA GPAPAGPSSA SPSTMSMWSS XPSSRPLTYG  180
HVPPEMAGMV GLRDVFVVAP AAAYHHNTHL HHHYGHDPNL LSSSDHHHSI NASNNLQPLS  240
ASEERQLMSA AAGGGAGSNS GSTSSAKKPR LIGASQTTTS HTSTSNITPP RSYDTSSSHQ  300
DAGFKDPLPG QVRAPAVFKC VRVTAVEDGE DEYAYQAVVK INGHVFKGXL YDQGVDGRDG  360
FPNISELHLG GGGNGRRNGA SSPILDPSDV YAASGAGLLG GSNFGVGSLA CSSTIKDRRK  420
CGNGDNCRLG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17175KKKRR
27176KKKRRK
37276KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008363042.21e-79protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A498KCA63e-78A0A498KCA6_MALDO; Uncharacterized protein
STRINGXP_009369677.15e-79(Pyrus x bretschneideri)
STRINGXP_008363042.15e-79(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.24e-39Lateral root primordium (LRP) protein-related