PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000209426
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 632aa    MW: 69481.9 Da    PI: 8.3885
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000209426genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05122144123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k F r  nL+ H r H
  MDP0000209426 122 FVCEICNKGFQRDQNLQLHRRGH 144
                    89*******************88 PP
2zf-C2H215.93.8e-05198220123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k +  +s+ k H++t+
  MDP0000209426 198 WKCEKCSKKYAVQSDWKAHQKTC 220
                    58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.37E-7121144No hitNo description
Gene3DG3DSA:3.30.160.602.2E-5121144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949122144IPR007087Zinc finger, C2H2
SMARTSM003550.017122144IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
SMARTSM0035598163193IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.3E-5186219IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.37E-7193219No hitNo description
SMARTSM0035588198218IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MPNITGDVEE GSFSSGNNTG ELEVHQDQQQ NHLHGSNSGG ASGAQSNSNG SVTHQQPQQP  60
PLKKKRNLPG TPGKYFYVET HHWTLRVITG ECLPIFGAML ESYPTAEVIA LSPTTLMATN  120
RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRTTTEVRK RVYICPEPTC VHHNPARALG  180
DLTGIKKHFS RKHGEKKWKC EKCSKKYAVQ SDWKAHQKTC GTREYKCDCG TIFSRRDSFI  240
THRAFCDALA EENNKVNQMP MPHDQLISSM AMNTNTSPMG GGVSEFLSYD INTNKNKLPE  300
DLVPMPFKSM NMNIPGGGGG GGGPGMFSNT TGSLFGGPRS VSSTSASSLQ LSSNNNNNSS  360
SGFNYLHHQE TKNGGSSLSS ITGAAQMSAT ALLQKAAKMG ATASNSTINS PMMQKSFXSN  420
MAGPDHGHLS SPNSILNNNI QPPPSYDHQP HHFQQQPQPS DPQSHNSHSM IGGFTNQLMQ  480
KGPQEMSQHF DHHSNNPSAS SAMNDMGLFS QVFMGIGGGG PQQNYQNHQA MLKNFEQDHH  540
DHQDINSPNN NSSNTNSTHR MNSALGPSTT LDLLGIGGSR PPSLHEQLHH HQQRLDLEAM  600
SQHRLPAIMN PFQQQQQRSH GDSAMEKQIW DV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-35194259368Zinc finger protein JACKDAW
5b3h_F6e-35194259368Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028956235.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
TrEMBLA0A498K8F80.0A0A498K8F8_MALDO; Uncharacterized protein
STRINGXP_008369087.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-89C2H2-like zinc finger protein