PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000209313
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 658aa    MW: 75042.5 Da    PI: 6.1496
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000209313genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.64.4e-15138195264
       trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykki 64 
                    W+++e laL+++r+ me+++ +       We+vs+k++e gf+rs+++Ckek+e+ ++++ +i
  MDP0000209313 138 WSNDELLALLRIRSTMENWFPEF-----TWEHVSRKLAEXGFKRSAEKCKEKFEEESRYFNNI 195
                    ********************998.....9******************************9875 PP
2trihelix94.51e-29507600186
       trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    rW+k+evlaLi++r ++ ++ ++g           k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  MDP0000209313 507 RWPKDEVLALINLRCSLFNNGGSGGdqdkdggvvMKAPLWERISQGMFEMGYKRSSKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQLS 600
                    8*****************9999875566788888*********************************************8.9999********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.388130189IPR017877Myb-like domain
SMARTSM007177.9134191IPR001005SANT/Myb domain
PfamPF138371.4E-9136194No hitNo description
SMARTSM007170.12504575IPR001005SANT/Myb domain
CDDcd122033.39E-23506580No hitNo description
PfamPF138376.5E-17506600No hitNo description
PROSITE profilePS500906.411507573IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MFDGVPAEQL HQLIASSRTS LPLPLPLPLS SFPPPPPNNN INTFHVPAGA PFDPYNNNNN  60
PSHLHHHQLL QIQPHQLHQN HQLLQLHRQX TATPENLEEK EEHSSTVSIS INNNLEIERD  120
RSSSVPASSD VPISSDPWSN DELLALLRIR STMENWFPEF TWEHVSRKLA EXGFKRSAEK  180
CKEKFEEESR YFNNIYFTKN YRFLSDXEQI XQGGGDAHQR SPDDHXHRNP DEHQEAPGDK  240
NNKKEMVEKP SDEGDHPDSX RNETFVEDNI GVISNEQLNP EEHNEKEVVV ETRPTNNNNK  300
RKRQRRFEML KGFCEDIVNR MMAQQEEMHX KLLEEMVKRN EEKLAREEAW KKQETDRMNK  360
ELEIMAREQX VAGDRQAMII KFLKKFXSSS SNSSTSTSSS PIQVQNPTLX TCRDFGGRKE  420
LDHHQEKENN PTTPSSLTES TLAPQSPTSS TLAPTPLRVP TVTISLSTTT TTTVALAPPE  480
NPSSEDVIIN AQNPSSISHD KQDLGKRWPK DEVLALINLR CSLFNNGGSG GDQDKDGGVV  540
MKAPLWERIS QGMFEMGYKR SSKRCKEKWE NINKYFRKTK DVNKKRSLDS RTCPYFHQLS  600
TLYNQGMLVS PSDQAPENRP ASPENHSLGD GDSTKHDEGE KNNNMVKQAP TXAFDFEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299304KRKRQR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.231330.0bud
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008370685.20.0trihelix transcription factor GTL2-like
TrEMBLA0A498K9960.0A0A498K996_MALDO; Uncharacterized protein
STRINGXP_008370685.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-96Trihelix family protein