PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000208739
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ZF-HD
Protein Properties Length: 320aa    MW: 35278.8 Da    PI: 9.8674
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000208739genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer97.97.5e-31111167259
    ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                    +++rY+eClkN Aa+ Ggh++DGCgEfmps g+e t+ alkCaAC+CHRnFHR+e + 
  MDP0000208739 111 SRIRYRECLKNYAANSGGHVLDGCGEFMPS-GDEDTPGALKCAACECHRNFHRKEIDG 167
                    579**************************9.7777*******************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-20112172IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.5E-29113165IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.1E-28114165IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.818115164IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.5E-29249318IPR009057Homeodomain-like
SuperFamilySSF466891.31E-17250317IPR009057Homeodomain-like
PROSITE profilePS500719.216254318IPR001356Homeobox domain
TIGRFAMsTIGR015651.7E-26256313IPR006455Homeodomain, ZF-HD class
CDDcd000860.00279257319No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEQRGRDNKV IGRMPSTLTY TPPPPHRDSS SSKLSSSPAF SSAGHHGNNT ILFTHPPHQT  60
LDRSRRDPDP NPDLVPSPLV VTPSATTTIA SGTNFKAPAA PPPPPPSAAA SRIRYRECLK  120
NYAANSGGHV LDGCGEFMPS GDEDTPGALK CAACECHRNF HRKEIDGEYV SNNYYVINHQ  180
QHNSRRDSAL TRLPVLASSP RGLPVYHSMA GGPSPPMMMT FGGGGGVVAE SSSEDLNMNN  240
KLFRGANYAE EAQGSKKRFR TKFSQEQKEK MTEVAEKLGW RIQKHDEQEV QKLCSEVGIK  300
RQVFKVWMHN NKKAMKKKQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-232553141675ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.233300.0bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008344270.10.0zinc-finger homeodomain protein 6
SwissprotQ9ZPW72e-67ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A251NBY41e-113A0A251NBY4_PRUPE; Uncharacterized protein
TrEMBLA0A251NEX71e-113A0A251NEX7_PRUPE; Uncharacterized protein
TrEMBLM5VV111e-113M5VV11_PRUPE; Uncharacterized protein
STRINGXP_008344270.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.12e-59homeobox protein 24