PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000208739 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 320aa MW: 35278.8 Da PI: 9.8674 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 97.9 | 7.5e-31 | 111 | 167 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +++rY+eClkN Aa+ Ggh++DGCgEfmps g+e t+ alkCaAC+CHRnFHR+e + MDP0000208739 111 SRIRYRECLKNYAANSGGHVLDGCGEFMPS-GDEDTPGALKCAACECHRNFHRKEIDG 167 579**************************9.7777*******************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 4.0E-20 | 112 | 172 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 6.5E-29 | 113 | 165 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.1E-28 | 114 | 165 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.818 | 115 | 164 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-29 | 249 | 318 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.31E-17 | 250 | 317 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.216 | 254 | 318 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 1.7E-26 | 256 | 313 | IPR006455 | Homeodomain, ZF-HD class |
CDD | cd00086 | 0.00279 | 257 | 319 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MEQRGRDNKV IGRMPSTLTY TPPPPHRDSS SSKLSSSPAF SSAGHHGNNT ILFTHPPHQT 60 LDRSRRDPDP NPDLVPSPLV VTPSATTTIA SGTNFKAPAA PPPPPPSAAA SRIRYRECLK 120 NYAANSGGHV LDGCGEFMPS GDEDTPGALK CAACECHRNF HRKEIDGEYV SNNYYVINHQ 180 QHNSRRDSAL TRLPVLASSP RGLPVYHSMA GGPSPPMMMT FGGGGGVVAE SSSEDLNMNN 240 KLFRGANYAE EAQGSKKRFR TKFSQEQKEK MTEVAEKLGW RIQKHDEQEV QKLCSEVGIK 300 RQVFKVWMHN NKKAMKKKQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 7e-23 | 255 | 314 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.23330 | 0.0 | bud| fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008344270.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
Swissprot | Q9ZPW7 | 2e-67 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A251NBY4 | 1e-113 | A0A251NBY4_PRUPE; Uncharacterized protein | ||||
TrEMBL | A0A251NEX7 | 1e-113 | A0A251NEX7_PRUPE; Uncharacterized protein | ||||
TrEMBL | M5VV11 | 1e-113 | M5VV11_PRUPE; Uncharacterized protein | ||||
STRING | XP_008344270.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 2e-59 | homeobox protein 24 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000208739 |