PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000208320
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CO-like
Protein Properties Length: 331aa    MW: 36605 Da    PI: 7.6102
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000208320genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.52.4e-071458240
       zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                   ++r+C+ ++   + l+C+ ++  lC +C  e H+       Ht++
  MDP0000208320 14 QKRVCDYCGTSMALLYCRADSAKLCFSCDREVHSXnqlftkHTRS 58
                   789*******99*********************667888888875 PP
2zf-B_box315.2e-105992438
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkgHt 38
                     C+ +++ ++++fC++ ++ lC++C  e+H +Ht
  MDP0000208320 59 LLCDXCDKSPASIFCTTEGSVLCQNCDWESH-NHT 92
                   57*****************************.876 PP
3CCT61.23.4e-21287329143
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                    Re al+RYkeK+ktR++eK+irYesRK++AesR R+KGrF+k 
  MDP0000208320 287 RETALSRYKEKKKTRRYEKHIRYESRKVRAESRTRIKGRFAKM 329
                    99***************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.4E-141360IPR000315B-box-type zinc finger
PROSITE profilePS5011910.7511360IPR000315B-box-type zinc finger
PfamPF006437.4E-71458IPR000315B-box-type zinc finger
CDDcd000217.85E-71660No hitNo description
PROSITE profilePS5011910.97856106IPR000315B-box-type zinc finger
PfamPF006433.0E-75992IPR000315B-box-type zinc finger
CDDcd000212.43E-56089No hitNo description
SMARTSM003360.36196IPR000315B-box-type zinc finger
PROSITE profilePS5101714.753287329IPR010402CCT domain
PfamPF062034.1E-16287329IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MNGGTRNEES EATQKRVCDY CGTSMALLYC RADSAKLCFS CDREVHSXNQ LFTKHTRSLL  60
CDXCDKSPAS IFCTTEGSVL CQNCDWESHN HTSSSAAXAV HDRRPLEGFS GCPCLSELLA  120
VVGFENMDKK ALLLSDEGVG GGGGGGEGFS DFPVWDTPSV VSLDDLIVNN PAYKFQAMGV  180
PPLPKNRNAA CGQHKEEILH QLRVLVKSEP NLFSEDXDVK SPKGFQSLAS EQNAQPGRFF  240
TGFEHDAEPT AFPAYGVGSR FNEGYGGEMN SGASSAFPKV VPHCQNRETA LSRYKEKKKT  300
RRYEKHIRYE SRKVRAESRT RIKGRFAKMD R
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.137501e-115bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028945076.10.0zinc finger protein CONSTANS-LIKE 13-like
SwissprotO822569e-92COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A498ISN10.0A0A498ISN1_MALDO; Uncharacterized protein
STRINGXP_008350082.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.13e-81B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]