PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000207866 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HB-other | ||||||||
Protein Properties | Length: 252aa MW: 28819.9 Da PI: 7.324 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.5 | 1.3e-19 | 19 | 74 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ ql +Le+++++++yp++e++ +LA++l+L+e+q++ WF+ rR k+k+ MDP0000207866 19 KKRKLKTPAQLMALEKFYNEHKYPTEEMKSQLAEQLRLSEKQISGWFCHRRLKDKR 74 89****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-21 | 2 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.151 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.1E-19 | 17 | 79 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.11E-18 | 17 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.95E-17 | 19 | 74 | No hit | No description |
Pfam | PF00046 | 4.2E-17 | 19 | 74 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MESNELHSEE NKNSQDNNKK RKLKTPAQLM ALEKFYNEHK YPTEEMKSQL AEQLRLSEKQ 60 ISGWFCHRRL KDKRLSRDET QANGRQDRSS VVIQDRASGL GQDSCGSTKH GEHRFVDPRE 120 VESRRLSGHD FTSADITREY RSHYTERVGD MDNTSSESSS SLQDRLLTRK EDPYDVETSR 180 YLTHTKGMEN MGYKPSGFMK VKGEAENAAI TAVKRQLGRQ YWEDGPLLGV EFDLLPRGAF 240 ESPIIGSGHG TS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.5887 | 0.0 | cell culture| leaf| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028944617.1 | 0.0 | uncharacterized protein LOC103430831 isoform X1 | ||||
TrEMBL | A0A251PSY1 | 1e-150 | A0A251PSY1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008375850.1 | 0.0 | (Malus domestica) | ||||
STRING | XP_008391024.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5792 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 6e-82 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000207866 |