PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000207283
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 598aa    MW: 64237.6 Da    PI: 8.3906
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000207283genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.95.2e-11152178127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    ++ ++C +++rtG+C yG+rC+++H++
  MDP0000207283 152 PGVPNCVYYMRTGFCGYGGRCRYNHPR 178
                    5789*********************96 PP
2zf-CCCH39.78.2e-13199223327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    ++ C+++++tGtCk+G++CkF+H++
  MDP0000207283 199 EPVCQYYLKTGTCKFGASCKFHHPK 223
                    789********************96 PP
3zf-CCCH361.2e-11244269227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    ++ +C+++++tG+Ck+G +CkF+H++
  MDP0000207283 244 GENECSYYLKTGQCKFGITCKFHHPQ 269
                    6789********************97 PP
4zf-CCCH34.92.6e-11403426427
                    ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     +C+++++tG CkyG++C+++H++
  MDP0000207283 403 LECQYYLKTGDCKYGPSCRYHHPR 426
                    58********************96 PP
5zf-CCCH35.41.8e-11467490326
                    S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      +C f++++G+Ck+G++CkF H+
  MDP0000207283 467 VQPCTFYLQNGQCKFGSTCKFDHP 490
                    579********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.7E-6151178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535151179IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-8153178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6155180IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4157178IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-7196223IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.676196224IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10199223IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6200224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5201223IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-5242269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.342242270IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-9244269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5245270IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-4248268IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-5399426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605399427IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8403426IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6403428IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-5405427IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-4465491IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.756465492IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6466495IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-9467490IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5468491IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MRREKERVFQ TFSECEAKRP IPDSTNTFAL RERAIKLLHH CEATVSVPLS LSPLSLTLSS  60
ARSSFSDPSK ASLEGWWESC TALPFPLTLL LIVAEGVQET QHAAVFVMEL YGRSPAGNGS  120
NQEWSPAAGE TGLEEQMWQL GLTGGESYPE RPGVPNCVYY MRTGFCGYGG RCRYNHPRDR  180
AAVVAAVRAT GDYPDRVGEP VCQYYLKTGT CKFGASCKFH HPKHGAGSLN RAPLNIYGYP  240
LRPGENECSY YLKTGQCKFG ITCKFHHPQP AGTTIPASAP QFYPSVQSPV PLAEQYGGAS  300
TSLRVARPPL LTGSYVQGTY GPVLIPSPGV VPIQGWSPYS APLSPVPSPG AQPTVGATSL  360
YGVTQLPSPT HGLASPYTSI PSSVGPSSSN PIEQVFPERP GELECQYYLK TGDCKYGPSC  420
RYHHPRDRTV PRITCLLSPM GLPLRPGCTV GPSLADVSMS ISSCMGVQPC TFYLQNGQCK  480
FGSTCKFDHP VQTMRYDLSA SSLVDMPVVQ YPVGSLLATL APSSSSSDLR PEFLSASKRD  540
TYSTRVPSSG NTSSSSGGLI FSQSGSVSLS DVQLSSQTSS PLSNSRSTRP GGAFRRSI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.122110.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008389189.10.0zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A498ISN90.0A0A498ISN9_MALDO; Uncharacterized protein
STRINGXP_008389189.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-178C3H family protein