PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000206752
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 327aa    MW: 37113.7 Da    PI: 4.5368
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000206752genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.8e-1985139357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                    k++++t++q++ Le+ Fe ++++  e++ +LA++lgL+ rqV +WFqNrRa++k+
  MDP0000206752  85 KKRRLTANQVQFLEKKFELENKLEPERKVQLANELGLQPRQVAIWFQNRRARYKN 139
                    56689************************************************95 PP
2HD-ZIP_I/II125.62.3e-4085175292
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                    kkrrl+++qv++LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+k+k+lEkdy++Lk++yd+lk + ++L ke+ +L++e++
  MDP0000206752  85 KKRRLTANQVQFLEKKFELENKLEPERKVQLANELGLQPRQVAIWFQNRRARYKNKRLEKDYDSLKASYDKLKVDVDNLLKENGSLKNEVD 175
                    9**************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.77E-1973141IPR009057Homeodomain-like
PROSITE profilePS5007117.37880140IPR001356Homeobox domain
SMARTSM003891.4E-1782144IPR001356Homeobox domain
CDDcd000861.37E-1783141No hitNo description
PfamPF000462.0E-1685139IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-1987148IPR009057Homeodomain-like
PRINTSPR000319.9E-6111120IPR000047Helix-turn-helix motif
PROSITE patternPS000270115138IPR017970Homeobox, conserved site
PRINTSPR000319.9E-6120136IPR000047Helix-turn-helix motif
PfamPF021838.9E-15140181IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MTSGKLYGSS ADMKVIFQNE KRPRSSDVLE SLWIPTPSSS FHGSNSMVNF ENVSEGDSLD  60
RPFFQPKQEN EDEDYYGGYL HQPGKKRRLT ANQVQFLEKK FELENKLEPE RKVQLANELG  120
LQPRQVAIWF QNRRARYKNK RLEKDYDSLK ASYDKLKVDV DNLLKENGSL KNEVDSLKDV  180
LLSREKGKPD GGNSDSHNAI DSSDLVPRSX IPNEDSETVT KGAMVVCKQE DASSAKSDVF  240
DSDSPHCTEN HSPLLEPADS SHVFEPADQS DFSQDEDDDL GKTLLPPPQP YLLKLEDCCY  300
DNLPPPNSSN FGYIPLEDQQ PFCFWPY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.79710.0leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008339943.20.0homeobox-leucine zipper protein HAT5-like
TrEMBLA0A498HKE90.0A0A498HKE9_MALDO; Uncharacterized protein
STRINGXP_008339943.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27045.17e-32HD-ZIP family protein