PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000206646
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family BES1
Protein Properties Length: 510aa    MW: 57455.5 Da    PI: 6.4427
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000206646genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF82264.44.4e-2077125149
         DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnne 49 
                    gg++r ++++E+E++k+RER+ Rai+a+i+aGLR++Gny+l++raD+n+
  MDP0000206646  77 GGARRCRPMEEKERTKLRERQCRAITARILAGLRRHGNYNLRVRADIND 125
                    6899********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.1E-1679125IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514457.93E-103214483IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.804.2E-116216481IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.6E-60223481IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-31254268IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-31275293IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-31297318IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-31385407IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
METGLQKLIT SEEDDDEEME MVVKEEDGGD DEDGEKHVDA SQMMAGVDGE MPTISNDNNR  60
LQQHHQFQEQ VGTPGGGGAR RCRPMEEKER TKLRERQCRA ITARILAGLR RHGNYNLRVR  120
ADINDXPPRT PAXLKGVTXG XQSPGELNAX NTKGVYLPSL SPYDLPSSAR SQXSSIVGDG  180
AGQTESXPLI GGSMDNVGNK QIVDIPLKLK ERDFSSTXYI PVYVMLPLGV INMKCELVDP  240
DGLLKQLRVL KSVNVDGVMV NCWWGIVEGH XPQEYNWNGY KRLFQMVREL KLKLQVVMSF  300
HECGXNVGDD VCIPLPHWIG RXNPDIFFTD REGRXNPECL SWGIDKKRVL RGRTAVEFDX  360
MRSFXVEFDE YFKNGNIXMI QVGLGPCGEL RYPSCPVKHG WRYPGVCLRK ATEARGHSFW  420
GRGPDNAGSY NSGPNETGFF SDGGXYDGYY GRFFLNWYSR VLVDHGDRVL SLAKLAFDGT  480
CIAARKKEVG TYFEVVAXEF KXYRRQNHPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1q6g_A4e-8321950811308beta-amylase
1v3i_A4e-8321950811308Beta-amylase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340422.10.0PREDICTED: LOW QUALITY PROTEIN: beta-amylase 7
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A498KK020.0A0A498KK02_MALDO; Beta-amylase
STRINGXP_009340422.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]