PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000206202

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

GRAS

Protein Properties

Length: 317aa MW: 35866.3 Da PI: 5.9606

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000206202	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	28.8	1.5e-09	258	311	2	55
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 + Ll++Ae v +++e+a++lL + + as + + +qR+++yfteAL++r+ + MDP0000206202 258 AHILLAAAEKVGYQQFERANRLLLHCEVDASFKVNGVQRVVFYFTEALRERIKQ 311 699*************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	5.0E-7	258	311	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MHSSPSQPLI FGVLGSGGGL TPQLEEYEKE DQEFKGKPDH LVGIQELGLG ERENLSHLSK 60 DQQHFKASYL MTDNFSFDTV CSEHDLQRSN SKSKKGRAHA KITPRQYQQQ NQHYQQQSKS 120 NYFDLDNFXF DPSFPSTQTI QDAGNQLMYS QIGGSDIAET NKQMPHQSSL AALDLLNNYG 180 SAFKKLRGDR LSNRCNEAEA SSYSIQQKLS TEEIMRVAGA RYVQISDQGY GDFFMPLHPF 240 GYXLSGLSEE ETKDVELAHI LLAAAEKVGY QQFERANRLL LHCEVDASFK VNGVQRVVFY 300 FTEALRERIK QETGNSM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008369103.2	0.0	uncharacterized protein LOC103432677
TrEMBL	A0A498K8A5	0.0	A0A498K8A5_MALDO; Uncharacterized protein
STRING	XP_008374972.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Link Out ? help Back to Top
Phytozome	MDP0000206202