PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000205637
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 263aa    MW: 30117.1 Da    PI: 10.3374
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000205637genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.72.4e-26156206151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                    k ien   rqv fskRr g+lKKA+ELSvLCdaeva++ifs +gklye+s+
  MDP0000205637 156 KCIENRASRQVIFSKRRSGLLKKAFELSVLCDAEVALVIFSARGKLYEFSK 206
                    579**********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.30.1601.8E-141363No hitNo description
SuperFamilySSF637487.22E-141364No hitNo description
SMARTSM002931.8E-61875IPR000313PWWP domain
PfamPF008558.8E-101963IPR000313PWWP domain
PROSITE profilePS5081210.9372082IPR000313PWWP domain
SMARTSM004328.1E-33148207IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.595148208IPR002100Transcription factor, MADS-box
CDDcd002658.88E-31150205No hitNo description
PRINTSPR004045.5E-27150170IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-25150209IPR002100Transcription factor, MADS-box
PfamPF003199.0E-24158204IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-27170185IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-27185206IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MAPGRRRGAS KAKDKGKLSL GDLVLAKVKG FPYWPAKISM LEDWKKVPDS KKYFVQFFGT  60
EEITSRPSPV VMFEKPLLNL TFKDLIAATL HFGKNSQLVE GCSWLQGSLV CPFLEGLKIF  120
LLVLEISREI DFWGFPEFDF RVRKGEKMVR GKTQMKCIEN RASRQVIFSK RRSGLLKKAF  180
ELSVLCDAEV ALVIFSARGK LYEFSKIQWL QTESNACSTL YLPSHHHRGQ PADSRVHMHD  240
SSETEREESE EKKAKALAKQ KRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.162571e-109bud| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3702121e-106AB370212.1 Malus x domestica MADS16 mRNA for MADS-box transcription factor, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.16e-28AGAMOUS-like 14