PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000205236
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 638aa    MW: 70706.5 Da    PI: 5.2547
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000205236genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4386.8e-1341685362373
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    +e+L +cA+a++++d++ +++l++ l++++s +g+p+qRl ay++e+L arla+s+s+++++l+++e +   s+e l+++++++ev+P++kf+++ 
  MDP0000205236 168 TEVLCACAKALANNDMSTTEWLISILRQMVSVSGEPIQRLGAYILEGLIARLASSGSSICASLRCKEPA---SAELLSYMHILYEVCPYFKFGYMS 260
                    689*****************************************************************9...9*********************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                    aN aI ea++ e+rvHiiDf++ qG+QW++L+qaLa+Rp+gpp++RiTg+++++s   +   l  +g+rL+++Ae+++vpfef++ +    ++++l
  MDP0000205236 261 ANGAIAEAMKDESRVHIIDFQVAQGTQWITLIQALATRPGGPPQIRITGIDDSASAyvRGGGLGVVGQRLSRLAESCKVPFEFHA-AGIFGSEVQL 355
                    ****************************************************888899999************************.78899***** PP

           GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                    e+L+++pgEa+aVn++++lh+++desvs++++rd++L+l kslsPkvv++veqe+++n+++Fl rf+++l+y+ a+fds+++ lpre++eri+vE+
  MDP0000205236 356 EDLEIRPGEAIAVNFAFMLHHMPDESVSSHNHRDRLLRLAKSLSPKVVTLVEQESNTNTAPFLPRFIDTLSYFRAVFDSIDVALPREHRERINVEQ 451
                    ************************************************************************************************ PP

           GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                    ++l+reivn++acegaer+er e l+kWr+r+ +aGF+p++ls+++++++k+ll+ ++++ y++ee +g+l+lgW+++pLv+ +aW
  MDP0000205236 452 HCLAREIVNIIACEGAERVERYEPLSKWRSRFIMAGFSPYQLSSFVNATIKTLLQSYSEK-YTLEEIDGALYLGWMNKPLVASCAW 536
                    **********************************************************65.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.115141518IPR005202Transcription factor GRAS
PfamPF035142.3E-131168536IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MQESYKHVIP NVSHPFGEQP VEEPESYCWP SFQNADHQAS SDEVVQGTKL SVQRFEQHCX  60
LESSSGTSAY PGRSSASSLN FSGNGSPASH PDLHSYQSGG SPVNQSCMSN DTDDLXHKMR  120
ELENALLGND SDAFDVYDII DEXXXNQXYS EAEDREQMML MISRGDLTEV LCACAKALAN  180
NDMSTTEWLI SILRQMVSVS GEPIQRLGAY ILEGLIARLA SSGSSICASL RCKEPASAEL  240
LSYMHILYEV CPYFKFGYMS ANGAIAEAMK DESRVHIIDF QVAQGTQWIT LIQALATRPG  300
GPPQIRITGI DDSASAYVRG GGLGVVGQRL SRLAESCKVP FEFHAAGIFG SEVQLEDLEI  360
RPGEAIAVNF AFMLHHMPDE SVSSHNHRDR LLRLAKSLSP KVVTLVEQES NTNTAPFLPR  420
FIDTLSYFRA VFDSIDVALP REHRERINVE QHCLAREIVN IIACEGAERV ERYEPLSKWR  480
SRFIMAGFSP YQLSSFVNAT IKTLLQSYSE KYTLEEIDGA LYLGWMNKPL VASCAWSPIY  540
VLPPCDGXGV VAEVLATCTQ LNVILHSTFC VKSSDTRFNS PLRQAIVVPL PYNLNSSFPS  600
TVLLRCLVNS LFGXLHHFSX LLKRFYGVPH PQDGFXAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-641675364374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.249510.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008368529.20.0scarecrow-like protein 21
RefseqXP_008368530.20.0scarecrow-like protein 21
RefseqXP_017186908.20.0scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A498KD230.0A0A498KD23_MALDO; Uncharacterized protein
STRINGXP_008342206.10.0(Malus domestica)
STRINGXP_008368529.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]