PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000204959 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 186aa MW: 20968.2 Da PI: 7.0981 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00024 | 101 | 121 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 y+Cp+C F ++nL H++ MDP0000204959 101 YTCPKCXCEFVFSENLDAHMS 121 9*******************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MRIVLVDSSN ASEVSQFCSY NTSSHNQLRD LINLNAIELR GNKEFARTPR SNLSELRSHK 60 VSHPMVNLXX AQQEKNVGSD LSLXARIRTR RXLNKSKYAL YTCPKCXCEF VFSENLDAHM 120 SMNSDCPMDH SQFTWYLEHL AGLKLEATSP NSNATASNED GEKEDMARKQ ATLLTSSAEN 180 QGQPFN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A498IRE6 | 1e-114 | A0A498IRE6_MALDO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF38139 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000204959 |