PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000204890
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TALE
Protein Properties Length: 439aa    MW: 48411.5 Da    PI: 6.0575
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000204890genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.2e-093623991954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ +e+  LA+++gL+++qV +WF N R +
  MDP0000204890 362 FEHflHPYPNDNEKLLLASQTGLSKNQVANWFINARVR 399
                    564459******************************88 PP
2BELL99.92e-32225295272
           BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    ++elq++ a L++lle+V++r   y++q+++vissFe+v+g g+ak+Yt+lAlka+SrhF +L+dai++qi
  MDP0000204890 225 KHELQARLASLITLLEQVEDRCGTYYHQMEQVISSFEMVVGEGAAKSYTALALKAMSRHFCSLRDAIVSQI 295
                    79********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.6E-36154293IPR006563POX domain
PfamPF075268.9E-40159292IPR006563POX domain
PROSITE profilePS5007111.693340403IPR001356Homeobox domain
SMARTSM003891.2E-7343407IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-25348409IPR009057Homeodomain-like
SuperFamilySSF466899.41E-17349410IPR009057Homeodomain-like
CDDcd000866.30E-11349404No hitNo description
PfamPF059204.2E-16360399IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MVSQDSPPNP SSSIFHQFII SDSISAQNHH LESQHLDAYP PSFQTSTTVP QALGVLXGIH  60
SLGERMPRSV DLVQAPTGAS VENQAQRLSL SLGSRMLVPS VQYRYNNFLI GEESGEACNP  120
GVEHVGDEYC FXGGTLASHS RALNRSCSTS YGAESVAAVI ANSKYLKPAQ SLLEEIVNVG  180
GKLVDXSNEK XVGKLYGEGR QGGMGLSSEL KAELSCNAGL MNSDKHELQA RLASLITLLE  240
QVEDRCGTYY HQMEQVISSF EMVVGEGAAK SYTALALKAM SRHFCSLRDA IVSQIYTEKR  300
KLLQDVPKIS SGLSQLNLLD RECRHKRMSL QQLGIFQSQR QAFRPIRGLP ETSVAILRTW  360
LFEHFLHPYP NDNEKLLLAS QTGLSKNQVA NWFINARVRL WKPMIEEMYK EEFGESSEDS  420
NSLAAGSMTG EGNTDQTED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A7e-16349406158Homeobox protein Meis1
4xrs_B7e-16349406158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6272530.0AB627253.1 Malus x domestica mRNA, microsatellite: MEST101, clone: LEF01_08_A08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008377194.20.0LOW QUALITY PROTEIN: BEL1-like homeodomain protein 11
SwissprotQ1PFD11e-101BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A498J8L00.0A0A498J8L0_MALDO; Uncharacterized protein
STRINGXP_008377194.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126452329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-104BEL1-like homeodomain 11