PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000204889
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TALE
Protein Properties Length: 590aa    MW: 66012 Da    PI: 5.6025
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000204889genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36e-094154472254
                    SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +yp+ +e+  LA+++gLt +qV +WF N R +
  MDP0000204889 415 LPYPKDSEKIMLARQTGLTRNQVANWFINARVR 447
                    79*****************************88 PP
2BELL116.91e-37273344172
           BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    erq+lq+kk+kLls+l+eVd+rYkqy++q+q+v+s F+ vag g+a pYt+lAl+aiSr+Fr+L+d i++qi
  MDP0000204889 273 ERQDLQNKKTKLLSMLDEVDRRYKQYYHQMQAVVSFFDKVAGNGAAGPYTALALQAISRQFRSLRDXIKGQI 344
                    799*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.9E-56194342IPR006563POX domain
PfamPF075261.5E-48200340IPR006563POX domain
PROSITE profilePS5007111.791388451IPR001356Homeobox domain
CDDcd000868.29E-12391452No hitNo description
SMARTSM003891.5E-9391455IPR001356Homeobox domain
SuperFamilySSF466891.33E-16392460IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-27394457IPR009057Homeodomain-like
PfamPF059205.7E-16408447IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MATYFQNLSN QNLLNPYQGD EKLPSYPEPP GNMMMYLNQA SYGAGSYSEV LSGGNFSPQK  60
YADSDGGRSE MMFXPPTSDP VRDCDVGGES LIGKHSMQDH GLSLSLSTQI PQPVSLPSFQ  120
YQYPNSSLSS VLSNAPMIGK GEEYNQSEEF RNFESLASGL YGXGHEAVKT QAFYNPMCSS  180
GSKEMHSEYX YDSLGSTNAM LSSKYLKAAQ QLLDEVVNVK KALKQSRLDK NQSFKRSGSD  240
GSKETDGNDQ HLRRSSDPVE SSTISSVELS AAERQDLQNK KTKLLSMLDE VDRRYKQYYH  300
QMQAVVSFFD KVAGNGAAGP YTALALQAIS RQFRSLRDXI KGQIQVTRKR LGEQDNSSDG  360
QGSVIPRLRY VDQQLRQQRA FQQLGGLXHA WRPQRGLPES SVSILRAWLF EHFLLPYPKD  420
SEKIMLARQT GLTRNQVANW FINARVRLWK PMIEEMYKEE FGDLDTDAKS SPENALKEEA  480
RVDFSASEDR KVELHESLIS ATADSIEPGQ MHDSKSGHSS TYDMPGLDHF TVGNDVSLAL  540
ELRHCEEHDG FPPSTGSHVT GSDAAASLDC HYEDPEQQHL IQIWQYPRVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A6e-15397454158Homeobox protein Meis1
4xrs_B6e-15397454158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028962440.10.0BEL1-like homeodomain protein 3
SwissprotQ9FWS91e-117BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBLA0A498J8L00.0A0A498J8L0_MALDO; Uncharacterized protein
STRINGXP_008377193.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75410.21e-109BEL1-like homeodomain 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]