PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000204597
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRF
Protein Properties Length: 706aa    MW: 75734.4 Da    PI: 9.9523
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000204597genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.35.4e-23126171146
            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 
                    d+epgrCrRtDGKkWRCs+ v++g+k+C+ H+hrg++rsrk++e+s
  MDP0000204597 126 DPEPGRCRRTDGKKWRCSKSVVPGQKYCQQHMHRGCQRSRKHVETS 171
                    79*****************************************975 PP
2WRC62.37.1e-20347387242
            WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 
                     ep+rCrRtDGKkWRC+r+vl+++k+C  H+hrg +r++k 
  MDP0000204597 347 LEPRRCRRTDGKKWRCRRDVLPDQKYCGLHVHRGAKRQTKD 387
                    59************************************997 PP
3QLQ54.24.5e-195589337
            QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                   FTa Ql++L+ Q+l+yK+Laa++PvP +Ll++i++
  MDP0000204597 55 FTAVQLHELEEQALIYKHLAAGVPVPVQLLVPIWN 89
                   **********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.4E-115389IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.5115489IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.4E-125588IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.553126170IPR014977WRC domain
PfamPF088791.5E-18127169IPR014977WRC domain
PROSITE profilePS5166720.445346390IPR014977WRC domain
PfamPF088791.1E-16348387IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MEDGIMRREK EEREEVKLGL GIGVGCNYGD QNGKKKKMKC GGGGGGVGGG CGGGFTAVQL  60
HELEEQALIY KHLAAGVPVP VQLLVPIWNS VAASFGSSNA AAIYQHFPTF XGFNXVGGFD  120
YRSKMDPEPG RCRRTDGKKW RCSKSVVPGQ KYCQQHMHRG CQRSRKHVET SETSSPSSAK  180
QPKNTDAELC SSKTNLRIST PNGLHLKAQS SDNIGVSQGT TNASSGYQEC KTNIRSVTTT  240
SVAMIPANRT ATSPASAVTI AHAGPTAATN SSSNKNSISI GVKXYSSNHA GDNCMIRGSS  300
LNRNSTIVGS TISPGLGFSP KSVLQGRQMT FLISNGVCFN NSSGTELEPR RCRRTDGKKW  360
RCRRDVLPDQ KYCGLHVHRG AKRQTKDSQP IGVPSSSVAS MNTAQISQTT STTKKTDRAI  420
PNTNLSMSIP ARPPPMQNDE KSNSSGDSDT TITDTSLAAY EGSYWWKRGR KISGXFTMKR  480
FSGGDPNTSM LNSRSRHIQA HSCLWQTLPA KTNQLRSATD SLWAQLLAAP SHFQQIVRPY  540
LPAKSFASCY MPTRGQNNNY MIAEAYVGGA GMPYSNTTEI LTPPLLPSRN NTNTSVHFTS  600
LLGRVLPPLS TKLSLSTSAL TYCKLISTMS MGAIGTGRPK FPALAVLFYG SGLAVEPTDT  660
EAGDGGEIFN GGDCVSGDKF GGRGPGMSIQ CKDKDPLTYN LVDPPL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028948792.10.0growth-regulating factor 9
TrEMBLA0A498KKF00.0A0A498KKF0_MALDO; Uncharacterized protein
STRINGXP_009379280.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.14e-38growth-regulating factor 9