PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000204279

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LSD

Protein Properties

Length: 528aa MW: 59028.9 Da PI: 9.4057

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000204279	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.5	1.9e-12	365	389	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC+ + MDP0000204279 365 CSGCRSILLYPRGATNVCCALCNII 389 **********************975 PP
2	zf-LSD1	42	1.5e-13	404	428	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ +rGA+sVRCa+C+tV MDP0000204279 404 CGGCRTLLMHTRGATSVRCACCHTV 428 ************************9 PP
3	zf-LSD1	47.6	2.8e-15	442	466	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+CalC+ V MDP0000204279 442 CGNCRTTLMYPYGAPSVKCALCQYV 466 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF11955	2.4E-104	1	327	IPR021099	Plant organelle RNA recognition domain
TIGRFAMs	TIGR01053	4.6E-11	362	390	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.3E-10	365	388	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.2E-15	401	430	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.4E-11	404	428	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.1E-12	439	469	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	8.9E-14	442	466	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence Send to blast
MDKYKNLLKV IAVQDLILAN PHDPAVSLDF LSKLSQKLHL NRGAVAFLRK YPHIFHIYHD 60 PMKSQTFCRL TDRAVQISKD EAEAINASLQ LVVDRLLRLL SMSTSKMLPL RAIFKVGREL 120 GLPDDFEDTV IYKNSHLFHL CDAHEPNTHN LKLVNATSDK FIAAVENWRV EEYYKEGSNV 180 DRAEIQFSFK HGYPPGMKLR KKFRAKVKEX QRLPYVGPYD VMTEKKRLSK AGMMAVEKRA 240 VAIVHXFLNL TVEKMVEVEK ISHFRKCFGF DVNIRDLFLD HPGMFYLSTK GKRHTVFLRE 300 AYERGCLIHP NPVYNARRKL LDLVVLGXHG LFNDGSKPRN LASDKEAKSL EQHNEETSMQ 360 SQLVCSGCRS ILLYPRGATN VCCALCNIIT PVPPPGTEMA QLICGGCRTL LMHTRGATSV 420 RCACCHTVNL APASSQVAHI NCGNCRTTLM YPYGAPSVKC ALCQYVTNVG MSNMRVPIPA 480 HRPNGTTNSG MVPSTSASQT VVVENPMSVD ESGKLVSNVV VGVTTGKK

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence Send to blast

MDKYKNLLKV IAVQDLILAN PHDPAVSLDF LSKLSQKLHL NRGAVAFLRK YPHIFHIYHD  60
PMKSQTFCRL TDRAVQISKD EAEAINASLQ LVVDRLLRLL SMSTSKMLPL RAIFKVGREL  120
GLPDDFEDTV IYKNSHLFHL CDAHEPNTHN LKLVNATSDK FIAAVENWRV EEYYKEGSNV  180
DRAEIQFSFK HGYPPGMKLR KKFRAKVKEX QRLPYVGPYD VMTEKKRLSK AGMMAVEKRA  240
VAIVHXFLNL TVEKMVEVEK ISHFRKCFGF DVNIRDLFLD HPGMFYLSTK GKRHTVFLRE  300
AYERGCLIHP NPVYNARRKL LDLVVLGXHG LFNDGSKPRN LASDKEAKSL EQHNEETSMQ  360
SQLVCSGCRS ILLYPRGATN VCCALCNIIT PVPPPGTEMA QLICGGCRTL LMHTRGATSV  420
RCACCHTVNL APASSQVAHI NCGNCRTTLM YPYGAPSVKC ALCQYVTNVG MSNMRVPIPA  480
HRPNGTTNSG MVPSTSASQT VVVENPMSVD ESGKLVSNVV VGVTTGKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.913	0.0	fruit

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028966035.1	0.0	protein ROOT PRIMORDIUM DEFECTIVE 1-like isoform X1
Refseq	XP_028966036.1	0.0	protein ROOT PRIMORDIUM DEFECTIVE 1-like isoform X1
TrEMBL	A0A498IX25	0.0	A0A498IX25_MALDO; Uncharacterized protein
STRING	XP_004293683.1	0.0	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	3e-73	LSD family protein

Link Out ? help Back to Top
Phytozome	MDP0000204279