PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000203733

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB

Protein Properties

Length: 391aa MW: 42874.4 Da PI: 5.2195

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000203733	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.2	5.9e-16	44	89	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v +G ++W++Iar + gR++k+c++rw + MDP0000203733 44 KGPWSPEEDAVLSRLVSNFGARNWSLIARGID-GRSGKSCRLRWCNQ 89 79****************************.*********985 PP
2	Myb_DNA-binding	51.5	2.3e-16	96	140	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T Ed +v a++ +G++ W++Iar ++ gRt++ +k++w++ MDP0000203733 96 RKPFTDAEDRMIVAAHAVHGNK-WAAIARLLP-GRTDNAIKNHWNST 140 789*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.872	39	90	IPR017930	Myb domain
SuperFamily	SSF46689	5.99E-29	42	137	IPR009057	Homeodomain-like
SMART	SM00717	8.5E-13	43	92	IPR001005	SANT/Myb domain
Pfam	PF00249	5.9E-15	44	89	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-24	45	97	IPR009057	Homeodomain-like
CDD	cd00167	2.00E-12	46	88	No hit	No description
PROSITE profile	PS51294	25.641	91	145	IPR017930	Myb domain
SMART	SM00717	8.2E-16	95	143	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-13	96	140	IPR001005	SANT/Myb domain
CDD	cd00167	1.20E-11	98	141	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.5E-23	98	144	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MEMEVAXDPA AVEIDAGDCG DCGEEAAAGG GAGSRRKSGR DNVKGPWSPE EDAVLSRLVS 60 NFGARNWSLI ARGIDGRSGK SCRLRWCNQL DPAVKRKPFT DAEDRMIVAA HAVHGNKWAA 120 IARLLPGRTD NAIKNHWNST LKRRCMDPEK IKLESGNMVE DVSLDKTKGS SEETFSYGDV 180 NSSKSMEGRE VSSFQHMDDQ DEYNGSSEVQ FSHEATEQPN LFRPVARISA FSVYNQSNSQ 240 ELESSFPRPI PAQGPLVRES KLDVGISKFL KGVYGELSVP DQCAHGCCCA QNGMNFQNSL 300 LGPEFVEFSE PPLFPSFELA AIATDISNLA WLKSGLENNS VRAVGETAGR ITTHGSQDQT 360 GRFEESRTNH LFPTEERKDR LMGMKTNVIS T

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MEMEVAXDPA AVEIDAGDCG DCGEEAAAGG GAGSRRKSGR DNVKGPWSPE EDAVLSRLVS  60
NFGARNWSLI ARGIDGRSGK SCRLRWCNQL DPAVKRKPFT DAEDRMIVAA HAVHGNKWAA  120
IARLLPGRTD NAIKNHWNST LKRRCMDPEK IKLESGNMVE DVSLDKTKGS SEETFSYGDV  180
NSSKSMEGRE VSSFQHMDDQ DEYNGSSEVQ FSHEATEQPN LFRPVARISA FSVYNQSNSQ  240
ELESSFPRPI PAQGPLVRES KLDVGISKFL KGVYGELSVP DQCAHGCCCA QNGMNFQNSL  300
LGPEFVEFSE PPLFPSFELA AIATDISNLA WLKSGLENNS VRAVGETAGR ITTHGSQDQT  360
GRFEESRTNH LFPTEERKDR LMGMKTNVIS T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-39	41	144	4	107	B-MYB
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.12866	0.0	fruit

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ074459	0.0	DQ074459.1 Malus x domestica MYB2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001315857.1	0.0	transcription factor MYB59-like
Swissprot	Q42575	9e-99	MYB1_ARATH; Transcription factor MYB1
TrEMBL	Q2LMF3	0.0	Q2LMF3_MALDO; MYB2
STRING	XP_008345508.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3986	33	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-100	myb domain protein 1

Link Out ? help Back to Top
Phytozome	MDP0000203733

Publications ? help Back to Top
Hellens RP, et al. Transient expression vectors for functional genomics, quantification of promoter activity and RNA silencing in plants. Plant Methods, 2005. 1: p. 13 [PMID:16359558] Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]