PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000203685 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 916aa MW: 102450 Da PI: 8.9503 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.8 | 1.4e-06 | 184 | 203 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC++++ G C++ + C+F H MDP0000203685 184 LCKDYMT-GRCRRASDCQFLH 203 9******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.394 | 179 | 206 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0018 | 179 | 205 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-5 | 183 | 203 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.028 | 240 | 267 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0044 | 241 | 266 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.671 | 304 | 331 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.085 | 304 | 330 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 916 aa Download sequence Send to blast |
MNRSSRKRSS KWDLVDEPQF EDANMQDNGW MGKAGRTFRP KESGHDWPSP ETNDLQRPKH 60 DLDLASREPL PGSRGSHKHG SMNKRCNRYI DDSMVWDGDE NCSTRMSPGF DDWREHRSQS 120 PKSGWKRSLS RNSXWMLCAE VGVEVESRSR SKSQSWSRSP DRGYRRESLF LDRNRGRPGI 180 SAQLCKDYMT GRCRRASDCQ FLHEGNSKYD DSWESRHRKR GALRYASPPE TTEYYPLKSE 240 RYSVXCSDFV KGKCRKGASC KFNHHRPSDG FSKDSTIDNT RERENERRNR DTSTERGAER 300 VPHRSGDIPC KFFAAGNCRN KKYCRFSHHI QAYVSPERKS KDGRWGPGHS LNDAGPAWNG 360 PKXSDTVTLS DAPMLTVDNR NIGVPEVRSS AWSVDDNRWG CDQNDENKNC ADRNVSHXAA 420 ERNEKDANLW KEDNVGARVD LPKSRDTEKW LGDMSPDWNY TVQSSNHVGK QEHGCITRGS 480 EPSTRVHGAA SIIEXEIAER SDFLQNKDLR GDGVISLPYD NRNAIEEPSS FRNNLSVTAN 540 IVGCQSFDNS GQSSSAFPFS GLSTIGQSQT LIPGRGIVKS PHDTLSPEGK SVNKLDIGDA 600 KTSLVDGIPQ VPSLVGGKEL KQLTNLSASL AQLLGNRQQL PQIYAALNXH NAVSTPPLLP 660 KSKGSXEQLL GATSQPDPAM LSHKPYDPIC DSIEHRINNN QMCLLXNSAG NTSVDGKVEK 720 LSNVVSPSSL PSGANTNNYH QTNNPVQEPT HENHQLSQLE RGAKPVVVKG NGXLGAXEIK 780 SDQEENNSPV NGPMEVTEKD GADGGKKLKE VKGSRAFKFA LVENVKELLK PSWKEGQVSK 840 DAYKTIVKKV VDKVTSTMQG ANIPQTQEKI DHYLSFSKPK LTKLVQVMFS FYSFSRFSXF 900 THHKGDNRSF VFVISQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017177942.2 | 0.0 | zinc finger CCCH domain-containing protein 38 isoform X1 | ||||
Refseq | XP_017177943.2 | 0.0 | zinc finger CCCH domain-containing protein 38 isoform X1 | ||||
TrEMBL | A0A498I2T3 | 0.0 | A0A498I2T3_MALDO; Uncharacterized protein | ||||
STRING | XP_008392056.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4099 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 5e-09 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000203685 |