PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000203685
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 916aa    MW: 102450 Da    PI: 8.9503
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000203685genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06184203525
                    --SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                    lC++++  G C++ + C+F H
  MDP0000203685 184 LCKDYMT-GRCRRASDCQFLH 203
                    9******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.394179206IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018179205IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5183203IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028240267IPR000571Zinc finger, CCCH-type
SMARTSM003560.0044241266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.671304331IPR000571Zinc finger, CCCH-type
SMARTSM003560.085304330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 916 aa     Download sequence    Send to blast
MNRSSRKRSS KWDLVDEPQF EDANMQDNGW MGKAGRTFRP KESGHDWPSP ETNDLQRPKH  60
DLDLASREPL PGSRGSHKHG SMNKRCNRYI DDSMVWDGDE NCSTRMSPGF DDWREHRSQS  120
PKSGWKRSLS RNSXWMLCAE VGVEVESRSR SKSQSWSRSP DRGYRRESLF LDRNRGRPGI  180
SAQLCKDYMT GRCRRASDCQ FLHEGNSKYD DSWESRHRKR GALRYASPPE TTEYYPLKSE  240
RYSVXCSDFV KGKCRKGASC KFNHHRPSDG FSKDSTIDNT RERENERRNR DTSTERGAER  300
VPHRSGDIPC KFFAAGNCRN KKYCRFSHHI QAYVSPERKS KDGRWGPGHS LNDAGPAWNG  360
PKXSDTVTLS DAPMLTVDNR NIGVPEVRSS AWSVDDNRWG CDQNDENKNC ADRNVSHXAA  420
ERNEKDANLW KEDNVGARVD LPKSRDTEKW LGDMSPDWNY TVQSSNHVGK QEHGCITRGS  480
EPSTRVHGAA SIIEXEIAER SDFLQNKDLR GDGVISLPYD NRNAIEEPSS FRNNLSVTAN  540
IVGCQSFDNS GQSSSAFPFS GLSTIGQSQT LIPGRGIVKS PHDTLSPEGK SVNKLDIGDA  600
KTSLVDGIPQ VPSLVGGKEL KQLTNLSASL AQLLGNRQQL PQIYAALNXH NAVSTPPLLP  660
KSKGSXEQLL GATSQPDPAM LSHKPYDPIC DSIEHRINNN QMCLLXNSAG NTSVDGKVEK  720
LSNVVSPSSL PSGANTNNYH QTNNPVQEPT HENHQLSQLE RGAKPVVVKG NGXLGAXEIK  780
SDQEENNSPV NGPMEVTEKD GADGGKKLKE VKGSRAFKFA LVENVKELLK PSWKEGQVSK  840
DAYKTIVKKV VDKVTSTMQG ANIPQTQEKI DHYLSFSKPK LTKLVQVMFS FYSFSRFSXF  900
THHKGDNRSF VFVISQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017177942.20.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_017177943.20.0zinc finger CCCH domain-containing protein 38 isoform X1
TrEMBLA0A498I2T30.0A0A498I2T3_MALDO; Uncharacterized protein
STRINGXP_008392056.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.15e-09C3H family protein