PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000202669
Common NameCOL1, LOC103442491
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CO-like
Protein Properties Length: 340aa    MW: 38138.7 Da    PI: 6.0101
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000202669genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.74.7e-08436436
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                   + C+ +++   +lfC+ ++ +lC +C +++H  
  MDP0000202669  4 KLCDSCKSATGTLFCRADSAFLCVNCDSKIHAA 36
                   68*****************************54 PP
2zf-B_box27.95e-094691342
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                    + C+ +e+ +++  C+ ++  lC +C   +H+       H++vp+
  MDP0000202669 46 VWLCEVCEQAPAHVTCKADDAALCVTCDRDIHSAnplsrrHERVPV 91
                   679*****************************66899999999986 PP
3CCT69.96.5e-24279322144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  MDP0000202669 279 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 322
                    9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.7E-14148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.381148IPR000315B-box-type zinc finger
PfamPF006431.3E-5443IPR000315B-box-type zinc finger
CDDcd000211.76E-8548No hitNo description
PROSITE profilePS5011910.8364491IPR000315B-box-type zinc finger
PfamPF006432.7E-74691IPR000315B-box-type zinc finger
CDDcd000214.07E-94791No hitNo description
SMARTSM003364.0E-114991IPR000315B-box-type zinc finger
PfamPF062035.0E-18279321IPR010402CCT domain
PROSITE profilePS5101716.787279321IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MALKLCDSCK SATGTLFCRA DSAFLCVNCD SKIHAANKLA SRHARVWLCE VCEQAPAHVT  60
CKADDAALCV TCDRDIHSAN PLSRRHERVP VTPFYDSVNS ATDSVPAVKS AVNFLNDRYF  120
SDVDGEIEAR REEAEAASWL LPNPKAMENP DLNSGQYLFP EMDPYMDLDY GHVDPKLEDA  180
QEQNSCITDG VVPEQSKNMQ PQLVNDHSFE IDFSAASKPF VYGYHHAQCL RQSVSSSSMD  240
VSIVPDDNAM TDDSNPYNKS MTSAVESSHP AVQLSSADRE ARVLRYREKR KNRKFEKTIR  300
YASRKAYAET RPRIKGRFAK RTEVEIEAEP MCRYGIVPSF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.29290.0bud| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0525840.0AF052584.1 Malus domestica cultivar Fuji CONSTANS-like protein 1 (Col1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008379517.10.0zinc finger protein CONSTANS-LIKE 4 isoform X1
SwissprotQ940T91e-139COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLB3GCI60.0B3GCI6_MALDO; CONSTANS-like 1
STRINGXP_008379509.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-136CONSTANS-like 4
Publications ? help Back to Top
  1. H
    Isolation of flowering genes and seasonal changes in their transcript levels related to flower induction and initiation in apple (Malus domestica).
    Tree Physiol., 2008. 28(10): p. 1459-66
    [PMID:18708327]