PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000202657 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 376aa MW: 41472.7 Da PI: 7.1631 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.1 | 7e-32 | 211 | 266 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ MDP0000202657 211 KQRRNWSPELHRRFLNALQQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 266 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.384 | 208 | 268 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-28 | 209 | 269 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.89E-18 | 209 | 269 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-27 | 211 | 266 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.2E-8 | 213 | 264 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 376 aa Download sequence Send to blast |
MESTEEMQAS SKLGFREYVK ALEEERHKIQ VFQRELPLCF ELVTQAIERC KQPVSDTTAD 60 YMHGQSECSQ QTSSEGHVFE EFIPLKRTSS SDSEDDEVHE SQEAKDNEKD DKIAGGDKKK 120 SDWLRSVQLW NTTPDAPLKE ELPRKALVME VNRNGGAFQP FQKEKSIGKT XVPVAKQPSS 180 AAATSSTTDT VSGGSGENNK KEEKDGLGQR KQRRNWSPEL HRRFLNALQQ LGGSHAATPK 240 QIRELMKVDG LTNDEVKSHL QKYRLHTRRP TPTIRGNNNA AQAPQFVVVG GIWVPPQDYA 300 AVAATTASGE AANNGIYAPV ASTPAVTQVS PPVQRLRLKQ PEPSHSDERV SHNEGRGHSN 360 STATSSSPHT PPSPAF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-13 | 211 | 264 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-13 | 211 | 264 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-13 | 211 | 264 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-13 | 211 | 264 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-13 | 211 | 264 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-13 | 211 | 264 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-13 | 211 | 264 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-13 | 211 | 264 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-13 | 211 | 264 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-13 | 211 | 264 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-13 | 211 | 264 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-13 | 211 | 264 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.26507 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00160 | DAP | Transfer from AT1G25550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028947460.1 | 0.0 | transcription factor HHO3-like | ||||
Swissprot | Q9FPE8 | 1e-105 | HHO3_ARATH; Transcription factor HHO3 | ||||
TrEMBL | A0A498I6H4 | 0.0 | A0A498I6H4_MALDO; Uncharacterized protein | ||||
STRING | XP_009336613.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3918 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25550.1 | 2e-89 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000202657 |
Publications ? help Back to Top | |||
---|---|---|---|
|