PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000202292
Common NameWRKY1
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 268aa    MW: 30819.3 Da    PI: 4.5438
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000202292genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.1e-3054112259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+vers++d +v++itY+++Hnh+
  MDP0000202292  54 SDLWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERSKTDASVLIITYTSSHNHP 112
                    699***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-3146113IPR003657WRKY domain
SuperFamilySSF1182901.19E-2550114IPR003657WRKY domain
SMARTSM007748.0E-3653113IPR003657WRKY domain
PROSITE profilePS5081131.18154114IPR003657WRKY domain
PfamPF031061.7E-2555112IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDETLSPEPD SDVSRNLRPE TQPSKRRKVA HEKTVVTVKI GANVGKLKNE GPPSDLWSWR  60
KYGQKPIKGS PYPRGYYRCS TSKGCSAKKQ VERSKTDASV LIITYTSSHN HPGPPDVNVI  120
STTQQEQEDE QTQQEQEDDQ KQEQEQEDDQ EQEXDQKQDQ DKKQDHEQEH GKLEERFHYI  180
ESPIRSSQEE HIFTAHDTSF GFLLDEEQEP LSLSYSQLMS FSTPKLSEEN NDFFDELEEL  240
PTFSSFPSFM GRTNNLSFGI ERIPSVPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-22541141779Disease resistance protein RRS1
5w3x_D2e-22541141779Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.304850.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280896.10.0probable WRKY transcription factor 35
TrEMBLD9ZJE80.0D9ZJE8_MALDO; WRKY domain class transcription factor
STRINGXP_008386714.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97083241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.14e-37WRKY DNA-binding protein 35