PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000202241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | TCP | ||||||||
Protein Properties | Length: 222aa MW: 25375.4 Da PI: 10.4596 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 76.3 | 8.6e-24 | 160 | 214 | 2 | 56 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqak 56 g+kdrh k++T +g+RdRRvRls+++a++++dLq++LG+ ++sk ++WLl + MDP0000202241 160 FGGKDRHGKVCTIRGLRDRRVRLSVPTAIQLYDLQERLGLNQPSKVVDWLLDDDH 214 689************************************************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 23.463 | 162 | 220 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.8E-22 | 162 | 218 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MGWLSMRLFK DVMKWYHAVI KRGITHYTPE SVVALSLARV VPVSIFFRLF REPTRFVLTP 60 LCKSNIPLHH CGKEKTVEEI YYQLAKNPTT IGCRKLENGL PEGGEEQQKY SGGRLWSSTT 120 SRECVAKEAN KISSNPNLSR SSTPWPRLKD PRIVHASRAF GGKDRHGKVC TIRGLRDRRV 180 RLSVPTAIQL YDLQERLGLN QPSKVVDWLL DDDHNQVRLL LG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-14 | 168 | 210 | 2 | 44 | Putative transcription factor PCF6 |
5zkt_B | 3e-14 | 168 | 210 | 2 | 44 | Putative transcription factor PCF6 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.16324 | 1e-113 | fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM501067 | 1e-44 | KM501067.1 Malus domestica TCP domain-containing protein 13 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | XP_008348175.1 | 9e-91 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 6e-36 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000202241 |