PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000201945 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 240aa MW: 26276.5 Da PI: 6.5125 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.9 | 2.1e-33 | 20 | 76 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers d+++ ei+Y+geHnh+k MDP0000201945 20 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYKGEHNHSK 76 9***************************************.***************85 PP | |||||||
2 | WRKY | 25.9 | 2e-08 | 220 | 235 | 3 | 18 |
-SS-EEEEEEE--TT- CS WRKY 3 DgynWrKYGqKevkgs 18 Dg++WrKYGqK+vkg MDP0000201945 220 DGFRWRKYGQKVVKGE 235 9*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.0E-31 | 5 | 77 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-26 | 15 | 77 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.8E-37 | 18 | 76 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.686 | 20 | 77 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.2E-26 | 20 | 74 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.4E-9 | 204 | 235 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-6 | 211 | 236 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 10.338 | 213 | 240 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-4 | 220 | 235 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MEEDPKIVPS TANTDRPSYD GYNWRKYGQK QVKGSEYPRS YYKCTHPNCP VKKKVERSLD 60 GQIAEIVYKG EHNHSKPQPP KRXSSGTQGL GVASDGTGQD TNNRLCNSHH NERNDGSEVR 120 LEDQNEVGLP VHFYQSKALL PYDPLASGGI NGGGATPDNS CGLSGECEEG SKGLEAEDCE 180 PRSKRRKSEN QSNEAGISGE GVQDPRVVVQ SSVESDMTGD GFRWRKYGQK VVKGESIIPG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-18 | 6 | 77 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.11654 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Leaf promordia, trichomes, atrichoblasts, fertilized eggs, seed coat. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ020109 | 0.0 | KJ020109.1 Malus hybrid cultivar TTG2 protein (TTG2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008387690.2 | 1e-172 | WRKY transcription factor 44 isoform X1 | ||||
Swissprot | Q9ZUU0 | 1e-56 | WRK44_ARATH; WRKY transcription factor 44 | ||||
TrEMBL | A0A498IES4 | 1e-170 | A0A498IES4_MALDO; Uncharacterized protein | ||||
STRING | XP_008350407.1 | 1e-176 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6790 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.2 | 1e-59 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000201945 |