PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000201555
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 324aa    MW: 36214.6 Da    PI: 4.5693
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000201555genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2483e-15564155
            AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
                   s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  MDP0000201555  5 SRFRGVSRHRWTGRFEAHLWDkLSWNVtqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 64
                   789******************888855555447*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-16574IPR016177DNA-binding domain
CDDcd000181.57E-20574No hitNo description
PfamPF008479.3E-13564IPR001471AP2/ERF domain
PROSITE profilePS5103219.546672IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-15673IPR001471AP2/ERF domain
SMARTSM003809.3E-24678IPR001471AP2/ERF domain
PRINTSPR003672.0E-5718IPR001471AP2/ERF domain
PROSITE profilePS510329.99361149IPR001471AP2/ERF domain
SMARTSM003800.0033104155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-7123150IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-5123151IPR016177DNA-binding domain
PRINTSPR003672.0E-5131151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MKRSSRFRGV SRHRWTGRFE AHLWDKLSWN VTQKKKGKQV YLGAYDEEES AARAYDLAAL  60
KYWGASTFTN FPISDYEKEI EIMQSVXKEE YLASLRRKSS GFSRGTITMX DGKQESEEFS  120
ETSTQEEAAR AYDIAAIEYR GINAVTNFDL SSYIRWLKPK AGDTXATQEL EAVTXPQNMX  180
FMXNGYIPAD ETSFSHTNPF ASDYLNSPXN QEVTRSSTNL NTGSKSSSPT ALGLLLQSSI  240
FRELVQKNSN LSEDDSTDDE EPKNQPQAGS DDEYGGIFYA GTGENPLVCS SGTDGDNPWN  300
NIASTILLNQ PTKANASDSX FFFS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009342869.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A498J1R00.0A0A498J1R0_MALDO; Uncharacterized protein
STRINGXP_008348220.10.0(Malus domestica)
STRINGXP_008365506.10.0(Malus domestica)
STRINGXP_008379335.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.35e-56AP2 family protein