PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000201120

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Dof

Protein Properties

Length: 475aa MW: 52131.3 Da PI: 6.8648

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000201120	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.2	5.8e-36	103	164	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++k l+cprC+s +tkfCy+nnys+ qPr+fCk+C+ryWt+GG++rnvP+G+ rrknk+sss MDP0000201120 103 PDKVLPCPRCKSLETKFCYFNNYSVYQPRHFCKSCQRYWTAGGTIRNVPLGTRRRKNKHSSS 164 78999*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-26	100	160	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-30	104	161	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.055	107	161	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	109	145	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MSEVGDPAIK LFGRIIPLPQ LQIHDLSADK ECLVADTGEC REMEDPSVEK SCTQDTSSEL 60 DNSRENNRQG LIHENEGEVN CDQGEDQCVD SDTKGIEKSL RKPDKVLPCP RCKSLETKFC 120 YFNNYSVYQP RHFCKSCQRY WTAGGTIRNV PLGTRRRKNK HSSSQYHQVV GQPNAVPVTQ 180 GGTLNVVGQQ HLSPCGLPAS PKPVNEMKEG LSSVSDALLV ESTETASNQK HQMRNSETGS 240 AADGDDGSLS ATASQHIACL TKEMKQGGLP GYDNDSSHMY TMQYCPVLQW AKTPSWGIMM 300 FGSDSSNPNP SHVGPLPMVT VPSFCTPTFA FPFVPSLYWG YMPSWDSRKW NSQLVGSAGS 360 LSLLSSSGNS GCSGNSSATL GKYARDANVH EDVITKQCLW VPKTLRIDDP EEAAKSSIWS 420 TLRIKQDKNE LVVRGGIFKA FRKKSDTKTQ TLDADRVLQA NPAALSRSQS FQETT

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MSEVGDPAIK LFGRIIPLPQ LQIHDLSADK ECLVADTGEC REMEDPSVEK SCTQDTSSEL  60
DNSRENNRQG LIHENEGEVN CDQGEDQCVD SDTKGIEKSL RKPDKVLPCP RCKSLETKFC  120
YFNNYSVYQP RHFCKSCQRY WTAGGTIRNV PLGTRRRKNK HSSSQYHQVV GQPNAVPVTQ  180
GGTLNVVGQQ HLSPCGLPAS PKPVNEMKEG LSSVSDALLV ESTETASNQK HQMRNSETGS  240
AADGDDGSLS ATASQHIACL TKEMKQGGLP GYDNDSSHMY TMQYCPVLQW AKTPSWGIMM  300
FGSDSSNPNP SHVGPLPMVT VPSFCTPTFA FPFVPSLYWG YMPSWDSRKW NSQLVGSAGS  360
LSLLSSSGNS GCSGNSSATL GKYARDANVH EDVITKQCLW VPKTLRIDDP EEAAKSSIWS  420
TLRIKQDKNE LVVRGGIFKA FRKKSDTKTQ TLDADRVLQA NPAALSRSQS FQETT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.28796	1e-154	leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028961151.1	0.0	cyclic dof factor 3-like
TrEMBL	A0A498JG47	0.0	A0A498JG47_MALDO; Uncharacterized protein
STRING	XP_008231782.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	7e-39	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	MDP0000201120