PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000200915
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 654aa    MW: 72026.5 Da    PI: 6.6194
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000200915genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.1e-07268288526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C +f++ GtC++Gd C +aHg
  MDP0000200915 268 PCLDFRK-GTCRRGDLCEYAHG 288
                    6999***.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.206.1E-1910160IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.04E-1854161IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.14755162IPR020683Ankyrin repeat-containing domain
CDDcd002045.69E-1755159No hitNo description
PfamPF127963.4E-1055124IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00235585IPR002110Ankyrin repeat
PROSITE profilePS5008811.88890125IPR002110Ankyrin repeat
SMARTSM002480.001290122IPR002110Ankyrin repeat
PROSITE profilePS5010312.652263290IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4263289IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-5268288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4296326IPR000571Zinc finger, CCCH-type
SMARTSM0035677298321IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MAFVFEAEHS FSSLLELAAD NDVKGFKQSI SDPAVVNEIG LWYGRHSASR RMVLEYRTPL  60
MVASKYGSVD VVKLILSLSK ADVNFSLGPD KTTALHCAVS GGSEKAVETV KVLLQAGADP  120
NATDANGCFP LDVIVAPLNC SNLKVVLQEL LQYGGSVHAL SVSFGFSSPF LSTTPTNNSL  180
XSSIPDSTCN TYDIHGSSTP EKKEHPFDLS LPNIKDXIYA TDEFRMFSFK IRPCSRAYSH  240
DWTECPFVHP GENARRRDPR KFQYSCMPCL DFRKGTCRRG DLCEYAHGVF ECWLHPAQYK  300
TRLCKDGMSC LRQVCFFAHK PEEMRPLYVS TGSAMPSPHS ATSAAAFMDM AATLNVLPGS  360
TKAVEAMSPP FTPPMSLHDG IFDSSMAWPQ QYIPGLYLPG SNIQASRLRS SFNANNVPTE  420
EVNMLHNFEM EQQQSFHDGS SFSHSYISAS SMSHPRRQET LTPSNLNDVF ASHLSSPRFA  480
DQLANSSAFS SSKISIVRNQ LHQQQSMLSP IRTNVFSPRX VDQNLLQVPF GLSSLRMMSP  540
RSMEPLSPIG TRVSTLAQQE KQKPLYSPNS CDAGSNGVGS PMSMSKWESS SAKLDWSVQT  600
DEPGHLSKLS YTEHNVNEPD VSWIQSLVKE SPSDAKEITS VPESGTLLPI ECSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017183230.20.0zinc finger CCCH domain-containing protein 56-like, partial
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A498K4S30.0A0A498K4S3_MALDO; Uncharacterized protein
STRINGXP_008363574.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2044534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain