PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000200799

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

ZF-HD

Protein Properties

Length: 294aa MW: 32080.9 Da PI: 10.0126

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000200799	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.8	4.5e-32	51	106	3	57
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 v YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFH r++ MDP0000200799 51 VVAYKECLKNHAASLGGHALDGCGEFMPSPSSNpADPTSLKCAACGCHRNFHCRDQ 106 689****************************9****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	6.8E-27	52	106	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-21	54	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.997	54	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.4E-29	54	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	4.0E-7	193	244	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MDFTTVTATI QTPDTDTEPP SPTDPKFNFF SGRSLSFTSG AFQPQPKRTR VVAYKECLKN 60 HAASLGGHAL DGCGEFMPSP SSNPADPTSL KCAACGCHRN FHCRDQYRPK NNVIRNRLLP 120 APKTAHNNHS SSSSPSSSPN PTLSPQSPPP VSHLPPSYFA APPQMLLALS SGFSGPPDEH 180 PHQHQLNPTA VMKTEKYPGE KKRSRTKFSQ EQKEKMSSLP RKSGGECKRA TKDRWRIFAA 240 RWGLGGEFLR RRLERSAGVG GGGNMIINSN VSEINGEGER LGFDSMNAHI ADNN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.23292	0.0	bud\| cell culture\| fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008368241.2	1e-180	zinc-finger homeodomain protein 11-like
TrEMBL	A0A498HEM6	1e-180	A0A498HEM6_MALDO; Uncharacterized protein
STRING	XP_008339904.1	1e-180	(Malus domestica)
STRING	XP_008368241.1	1e-180	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1979	31	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69600.1	5e-37	zinc finger homeodomain 1

Link Out ? help Back to Top
Phytozome	MDP0000200799