PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000200748 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 164aa MW: 18307.1 Da PI: 9.554 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.9 | 8.6e-28 | 95 | 153 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE.-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrC.tsagCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YYrC t +gCp++k+v+r+ +dp ++++tY eH+h MDP0000200748 95 TDEYSWRKYGQKPIKGSPYPRGYYRCiTVKGCPARKQVDRAPNDPMTLIVTYYWEHRHA 153 69************************5556****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.7E-5 | 58 | 92 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 6.5E-30 | 83 | 153 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.552 | 89 | 155 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.41E-25 | 92 | 153 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-31 | 94 | 154 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-24 | 96 | 152 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MFIRVIIDDI TKLLQSPTPI GMAFTDLQGI DSTELALSLM SSAMSPLSTL PGELPGTGSA 60 SGSGKYHCSN SNRRKKQVKT IRVPVIGSKI NDIPTDEYSW RKYGQKPIKG SPYPRGYYRC 120 ITVKGCPARK QVDRAPNDPM TLIVTYYWEH RHAPENMELV CETK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-18 | 82 | 152 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028950524.1 | 7e-79 | WRKY transcription factor 1-like | ||||
Swissprot | Q9SJA8 | 3e-40 | WRK17_ARATH; Probable WRKY transcription factor 17 | ||||
TrEMBL | A0A498HMB1 | 1e-119 | A0A498HMB1_MALDO; Uncharacterized protein | ||||
STRING | XP_009367965.1 | 1e-70 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF38121 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 3e-41 | WRKY DNA-binding protein 11 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000200748 |
Publications ? help Back to Top | |||
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