PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000200646 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | NAC | ||||||||
Protein Properties | Length: 234aa MW: 26928.8 Da PI: 6.2561 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 127 | 1.5e-39 | 22 | 150 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 p +rF Ptde lv++yL+ k++g++ + ++i+e+d++k+eP dLp + +ekew+fFs+ d ky +++r nrat++g+ k tgk++e+ ++ MDP0000200646 22 XPSVRFXPTDELLVSYYLRSKIQGTDSLFRHTIPEIDVCKYEPCDLPaFFPEDHEKEWFFFSRPDYKYINSTRCNRATDQGFYKITGKEREIRAEe 117 6899**********************888788***************445566788*************************************985 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g k++L+fy+gr pk++ktdWv+hey l MDP0000200646 118 SKAVIGKKRILTFYEGRVPKSKKTDWVVHEYYL 150 66779**************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-42 | 16 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.723 | 21 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-19 | 23 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSSSSSITTE GGDAVHANVI LXPSVRFXPT DELLVSYYLR SKIQGTDSLF RHTIPEIDVC 60 KYEPCDLPAF FPEDHEKEWF FFSRPDYKYI NSTRCNRATD QGFYKITGKE REIRAEESKA 120 VIGKKRILTF YEGRVPKSKK TDWVVHEYYL TKIEVGSRPT KQMDFVLWRL KNKSASYKKP 180 KDDPIHGELA DSGANSEDDQ AAVSDVIAEP VEHLGYFFDN LQIETLISSK YCFN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-29 | 21 | 179 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-29 | 21 | 179 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-29 | 21 | 179 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-29 | 21 | 179 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-29 | 21 | 179 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-29 | 21 | 179 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-29 | 21 | 179 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-29 | 21 | 179 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-29 | 21 | 179 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-29 | 21 | 179 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-29 | 21 | 179 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-29 | 21 | 179 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-29 | 21 | 179 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-29 | 21 | 179 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.14082 | 0.0 | fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF968765 | 0.0 | HF968765.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, columnar allele. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008343469.2 | 1e-173 | protein NTM1-like 9 | ||||
TrEMBL | A0A498KME3 | 1e-134 | A0A498KME3_MALDO; Uncharacterized protein | ||||
STRING | XP_008343469.1 | 1e-173 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13710 | 5 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 2e-41 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000200646 |