PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000200355
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 541aa    MW: 60448.6 Da    PI: 9.8236
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000200355genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.7e-10341388455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  MDP0000200355 341 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 388
                    8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.97E-9335392No hitNo description
SuperFamilySSF474599.16E-17335406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-17337404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.618337387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-7341388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9343393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MGRASCTPGS QSRRRLSWID DASNRDREEG TGPVRLLKET LKIKRKDLFR PGREPLKRLD  60
WSWSEVSRSR PERLSRMGLK RSLKERSRTK CPKICLCFFS VMNRALPEML NCMNAPGTFI  120
AGNCTDMTVL ERQRARMKWQ QSDHHDQQQQ QTQYNFGGGE LSGVFSLPIH AQGLQGFLSG  180
NRAVKPDPSS ENGWAELGFG SCGLVMNNNG TAGFEGMGNA LNNNISRTFS CPPTVVAEKT  240
SGDTVLSQKL SLPAGKESFK KRKADKVQIN KAAAAAESDS TEKRMKSCAE KGDSKITEQT  300
STKNNDGESS GDTSKDNSKA SEVQKPDYIH VRARRGQATD SHSLAERVRR EKISERMKYL  360
QDLVPGCNKI TGKAGMLDEI INYVQSLQRQ VEFLSMKLAA VNPRLDFNID DLFAKESHFA  420
SNQQMFPTCA ANFPTMGMSS EMTNSVYLQL NPMQQLVSSS GLDMGLNSTD LALRRTISAP  480
SSIPEPFLDT SCFTVMSIKA CKILHATCSK PNLRQFGMLI YRTFSMWNFN KEDHPFNRNH  540
L
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.51960.0fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6272150.0AB627215.1 Malus x domestica mRNA, microsatellite: MEST043, clone: FLW01_31_C05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008377294.10.0transcription factor bHLH63 isoform X2
TrEMBLA0A498IXW60.0A0A498IXW6_MALDO; Uncharacterized protein
STRINGXP_008377294.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.12e-66cryptochrome-interacting basic-helix-loop-helix 1