PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000199422 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | TCP | ||||||||
Protein Properties | Length: 233aa MW: 26244.6 Da PI: 10.1063 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 69.4 | 1.2e-21 | 171 | 227 | 2 | 58 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpa 58 g+kdrhsk++T +g+Rd R+Rls+++a++++d q++LG+ ++sk ++WLl + + MDP0000199422 171 FGGKDRHSKVCTIRGLRDWRMRLSVPTAIQLYDHQERLGLNQPSKVVDWLLDDDHNQ 227 689************************************************886665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 22.077 | 173 | 231 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.7E-20 | 173 | 231 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MHQIPPSATD GKGVAAGVKN LEPRSKFMSP SSSELGSELL SPSSSEASSF PHRPSRCRSP 60 DWKHLNPCLP PSTHGSFVVR DRKKTEEVGE KYYQLAKNPT TIGYWKLENG LPEDGEEHQK 120 YSGGRLWSLT TSRECVAREA NKISSNPNLS RSLTPWPRLK DPRIVRASRA FGGKDRHSKV 180 CTIRGLRDWR MRLSVPTAIQ LYDHQERLGL NQPSKVVDWL LDDDHNQVRL LPG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.16324 | 1e-108 | fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM501067 | 2e-37 | KM501067.1 Malus domestica TCP domain-containing protein 13 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | XP_008348175.1 | 1e-87 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 2e-35 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000199422 |