PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000199365
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 168aa    MW: 19690.4 Da    PI: 8.4383
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000199365genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.45.3e-1354160395
                    EE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS..............-EEEEEE..EEETTEEEE-TTHH.HHHHHHT--TT- CS
             B3   3 kvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesg..............rsWevkliyrkksgryvltkGWk.eFvkangLkegD 78 
                    k l  sd ++++rl +pk+ +++h     +     +k  ++ d++               r+ ++k+  +++++ yvl +GW+ eFv   gLke+D
  MDP0000199365  54 KRLAASDLGELSRLLMPKEAVRKHvmsylD-----DKSAKMVDSKEglpvtivdwdtcnrRELTFKH--WNSGDFYVLNGGWRpEFVVRRGLKEND 142
                    77889*******************765541.....44555555444477777777779889999999..*************879*********** PP

                    EEEEEE-SS.SEE..EEE CS
             B3  79 fvvFkldgr.sefelvvk 95 
                     + ++ld++ ++ ++ ++
  MDP0000199365 143 QIGLYLDWDwKTSKYIFR 160
                    *******99888777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-1748165IPR015300DNA-binding pseudobarrel domain
CDDcd100171.35E-1250161No hitNo description
SMARTSM010190.001252162IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.5E-1353160IPR015300DNA-binding pseudobarrel domain
PfamPF023624.3E-1054160IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKLEEEDHHP SNVRLFGVGL GSSLNDPRGG HEPSTDLYLW DPTWDYSSIW KIRKRLAASD  60
LGELSRLLMP KEAVRKHVMS YLDDKSAKMV DSKEGLPVTI VDWDTCNRRE LTFKHWNSGD  120
FYVLNGGWRP EFVVRRGLKE NDQIGLYLDW DWKTSKYIFR FSVLQRAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008371198.11e-122putative B3 domain-containing protein At1g78640
TrEMBLA0A498K0T11e-120A0A498K0T1_MALDO; Uncharacterized protein
STRINGXP_008371198.11e-121(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF5791221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.12e-17B3 family protein