PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000199202
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ZF-HD
Protein Properties Length: 278aa    MW: 29727.6 Da    PI: 6.8634
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000199202genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer96.42.3e-3060114257
    ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                    ++vrY+eClkNhA+ +Ggha+DGC+Ef+++ g +gt +alkCaAC+CHRnFHR+e 
  MDP0000199202  60 KAVRYRECLKNHAVGIGGHALDGCCEFLAA-GPDGTLDALKCAACNCHRNFHRKEG 114
                    579**************************9.999********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.1E-2762113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-2162113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.3E-2663113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.6864113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.81E-16190265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27206265IPR009057Homeodomain-like
TIGRFAMsTIGR015657.8E-24207260IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEFEDQEEHE EEMEMAASYD SLGNSAGGRV KMSSSGPDGL ALAAAAAAAA ASDQQQQPRK  60
AVRYRECLKN HAVGIGGHAL DGCCEFLAAG PDGTLDALKC AACNCHRNFH RKEGDPXGHG  120
LGVITDAYGQ LVPHHGQQHH PQFSPYYRTP AGYLHVAAHH RPLALPSTSG GGGTYSGGQE  180
QDDDVSNPSG GGGGGGGSGG FGNGNGFRTK FSQEQKERML SLAERLGWRI QKQDEPAVQQ  240
FCNETGVKRH VLKVWMHNNK HTLGQHRDLV ASKLATMW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-242072622075ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.245793e-95fruit
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008338536.31e-148zinc-finger homeodomain protein 1-like
SwissprotQ6YXH55e-76ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A498HXZ31e-158A0A498HXZ3_MALDO; Uncharacterized protein
STRINGXP_008338536.11e-144(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.19e-60homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]