PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000199202 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 278aa MW: 29727.6 Da PI: 6.8634 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 96.4 | 2.3e-30 | 60 | 114 | 2 | 57 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++vrY+eClkNhA+ +Ggha+DGC+Ef+++ g +gt +alkCaAC+CHRnFHR+e MDP0000199202 60 KAVRYRECLKNHAVGIGGHALDGCCEFLAA-GPDGTLDALKCAACNCHRNFHRKEG 114 579**************************9.999********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.1E-27 | 62 | 113 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 8.0E-21 | 62 | 113 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.3E-26 | 63 | 113 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.68 | 64 | 113 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.81E-16 | 190 | 265 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-27 | 206 | 265 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.8E-24 | 207 | 260 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MEFEDQEEHE EEMEMAASYD SLGNSAGGRV KMSSSGPDGL ALAAAAAAAA ASDQQQQPRK 60 AVRYRECLKN HAVGIGGHAL DGCCEFLAAG PDGTLDALKC AACNCHRNFH RKEGDPXGHG 120 LGVITDAYGQ LVPHHGQQHH PQFSPYYRTP AGYLHVAAHH RPLALPSTSG GGGTYSGGQE 180 QDDDVSNPSG GGGGGGGSGG FGNGNGFRTK FSQEQKERML SLAERLGWRI QKQDEPAVQQ 240 FCNETGVKRH VLKVWMHNNK HTLGQHRDLV ASKLATMW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-24 | 207 | 262 | 20 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.24579 | 3e-95 | fruit |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008338536.3 | 1e-148 | zinc-finger homeodomain protein 1-like | ||||
Swissprot | Q6YXH5 | 5e-76 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A498HXZ3 | 1e-158 | A0A498HXZ3_MALDO; Uncharacterized protein | ||||
STRING | XP_008338536.1 | 1e-144 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 9e-60 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000199202 |
Publications ? help Back to Top | |||
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