PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000199110
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ZF-HD
Protein Properties Length: 322aa    MW: 35053.7 Da    PI: 9.3077
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000199110genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.65.2e-3251106357
    ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 
                     v YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFH r++
  MDP0000199110  51 VVAYKECLKNHAASLGGHALDGCGEFMPSPSSNpADPTSLKCAACGCHRNFHCRDQ 106
                    689******************************9******************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.9E-2752106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.2E-2954105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-2254102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.99754105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.9E-28193262IPR009057Homeodomain-like
SuperFamilySSF466897.68E-17197262IPR009057Homeodomain-like
TIGRFAMsTIGR015656.7E-27201257IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDFTTVTATI QTPDTDTEPP SPTDPKFNFF SGRSLSFTSG AFQPQPKRTR VVAYKECLKN  60
HAASLGGHAL DGCGEFMPSP SSNPADPTSL KCAACGCHRN FHCRDQYRPK NNVIRNRLLP  120
APKTAHNNHS SSSSPSSSPN PTLSPQSPPP VSHLPPSYFA APPQMLLALS SGFSGPPDEH  180
PHQHQLNPTA VMKTEKYPGE KKRSRTKFSQ EQKEKMSSFA EKVGWRVQKS DERSVEDFCS  240
EVGIGRGVFK VWMHNNKHGL RRRLERSAGV GGGGNMIINS NVSEINGEGE RXGFDSMNAH  300
IADNNVNANP LHLSNNGSSS SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-202022581874ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.232920.0bud| cell culture| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, inflorescences, open flowers and seeds. Detected in stems and seedlings. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008368241.20.0zinc-finger homeodomain protein 11-like
SwissprotQ9SEZ11e-64ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A498HEM60.0A0A498HEM6_MALDO; Uncharacterized protein
STRINGXP_008339904.10.0(Malus domestica)
STRINGXP_008368241.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.16e-61zinc finger homeodomain 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]