PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000198416
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 442aa    MW: 48119.7 Da    PI: 9.3962
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000198416genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00028209231223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    +C++Cg++Fs ++  + H  + H
  MDP0000198416 209 TCHKCGEHFSKWDAAEAHHLSkH 231
                    7*****************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280210231IPR007087Zinc finger, C2H2
SuperFamilySSF563991.44E-19233441No hitNo description
Gene3DG3DSA:3.90.228.106.1E-6236438IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MPTVWFSLKK SLHCQSEPSD VHAPKARKQL STILTRKARG GRSGCSRSIA NLKDVIHGSK  60
RHMERPPNNC SPRSIGSSEF LNPITHEVIL SNSRCELKIT TSLGGFHDGV GGGNANNDGC  120
GGGGGSTFMD TLKPGTPGPG GHPTMHYFNP SFRTSSTPPR KCHFLASADS TEGHAGFKGS  180
AFSGSAGGIR QSNRISFDKE NYNGSSAITC HKCGEHFSKW DAAEAHHLSK HAVTELMEGD  240
SSRKIVEIIC RTSWLKSENH CGRIERVLKV HNMQRTLARF EEYREIVKIK ASKLAKKHPR  300
CIADGNELLR FYGTTVACSL GLNGSSSLCV SEKCSVCRII RNGFSAKKEL KEGVGVFXTS  360
TSGRAFEAIE ILEEDASVRK ALIVCRVIAG RVHKPLENIQ EIAGQMGFDS LAGKMGLYSN  420
IEELYLLNPR ALLPCFLVIC KP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.118770.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008386033.20.0uncharacterized protein LOC103448548
TrEMBLA0A498IH940.0A0A498IH94_MALDO; Uncharacterized protein
STRINGXP_008386033.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49831013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-124C2H2 family protein