PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000197814 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | G2-like | ||||||||
Protein Properties | Length: 309aa MW: 34658.9 Da PI: 10.3665 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 79.3 | 4.6e-25 | 173 | 224 | 2 | 53 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 +r+ W+peLH rF++a++ LGG+++AtPk+i +m+v+gLt ++vkSHLQ Y MDP0000197814 173 KRRSWSPELHXRFLKAMSLLGGPQEATPKQIQAVMQVDGLTHDQVKSHLQPY 224 799***********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.327 | 169 | 229 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.66E-13 | 170 | 224 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 171 | 224 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-21 | 172 | 224 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.2E-6 | 174 | 225 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MASSNRLELT LSLKLANIEN VSQKLSVLNE HLQKHQEELR KLEAFRTEMP HSVLLLSDAV 60 QVLKNEISEL SDHQSERRSA FRKYKSSSPP FNPKPXGIDT TDHKQVMTSQ CSQSSSRMGM 120 MVNKEPTSPT PFPCDLNMAA DDFELESKPQ AQPESQPQPQ LPXPLPLPNL KNKRRSWSPE 180 LHXRFLKAMS LLGGPQEATP KQIQAVMQVD GLTHDQVKSH LQPYLGDGAS NXRLRINTSH 240 KMKYRLNNRG VQPASXVSGQ RAPHFYRDYW QQQQQLEGAS NGGVRVGIGS SNGGGRSRDI 300 SNKKAKTSR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017179486.2 | 0.0 | transcription factor HHO6-like | ||||
TrEMBL | A0A498HDE2 | 1e-157 | A0A498HDE2_MALDO; Uncharacterized protein | ||||
STRING | XP_009373817.1 | 1e-180 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14866 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 6e-20 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000197814 |