PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000196504

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

G2-like

Protein Properties

Length: 549aa MW: 63051.4 Da PI: 10.4858

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000196504	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.1	2.9e-31	81	134	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+++AtPk +l+lm+v gL+++hvkSHLQ+YR+ MDP0000196504 81 PRLRWTPQLHLSFVHAVERLGGQDRATPKLVLKLMNVRGLSISHVKSHLQMYRS 134 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.02	77	137	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-29	77	135	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.51E-14	79	135	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-22	81	136	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-8	82	133	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence Send to blast
MDELEFGYQE AEKSNEISEE QVENGSVGSS QKFSSFDLNE EASSDNEERG QGNKAADNDI 60 SSEGNEGRRV KVRQYVRSKM PRLRWTPQLH LSFVHAVERL GGQDRATPKL VLKLMNVRGL 120 SISHVKSHLQ MYRSKKLDGN GQVLSENHES KHGRDYISCM VHQTTNQPRR HVYFRMDNGG 180 IVVATNPHDC HSQSQPDFKA SSRSSSLLNK ELAKGNNSNK SIDTILQTLP INPSKFLEER 240 PPFETINKQQ WRAKRRPAAK INWSDNRHGS QSDHLMHHMH TTPRLIGESH NLRPPNWHLG 300 ESRNVRQFPS NTHNSITNSS CYKTEXKSPF RFELNEENFS KYKEWMPQLE LGLGQRVENY 360 EEKKILSRHR MXXESKPNQA LKVAKKKASI TAKEHIEDRH HKSKEAHRKQ PTSNXGNKAK 420 LRQEGGKNTR ASKKSEALHI SPPKRESQRF VFTVEGKGKE ERGVEEGKPK AAVEEKTSMD 480 KRKDKENKRS KGLPPTLAIA RIGGSEEENX SGRCTHMHAV RRTFTKEMRT LTKEXKFRLT 540 NFDIKIKIL

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence Send to blast

MDELEFGYQE AEKSNEISEE QVENGSVGSS QKFSSFDLNE EASSDNEERG QGNKAADNDI  60
SSEGNEGRRV KVRQYVRSKM PRLRWTPQLH LSFVHAVERL GGQDRATPKL VLKLMNVRGL  120
SISHVKSHLQ MYRSKKLDGN GQVLSENHES KHGRDYISCM VHQTTNQPRR HVYFRMDNGG  180
IVVATNPHDC HSQSQPDFKA SSRSSSLLNK ELAKGNNSNK SIDTILQTLP INPSKFLEER  240
PPFETINKQQ WRAKRRPAAK INWSDNRHGS QSDHLMHHMH TTPRLIGESH NLRPPNWHLG  300
ESRNVRQFPS NTHNSITNSS CYKTEXKSPF RFELNEENFS KYKEWMPQLE LGLGQRVENY  360
EEKKILSRHR MXXESKPNQA LKVAKKKASI TAKEHIEDRH HKSKEAHRKQ PTSNXGNKAK  420
LRQEGGKNTR ASKKSEALHI SPPKRESQRF VFTVEGKGKE ERGVEEGKPK AAVEEKTSMD  480
KRKDKENKRS KGLPPTLAIA RIGGSEEENX SGRCTHMHAV RRTFTKEMRT LTKEXKFRLT  540
NFDIKIKIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	82	136	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	82	136	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	82	136	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	82	136	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	82	136	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	82	136	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	82	136	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	82	136	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	82	136	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	82	136	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	82	136	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	82	136	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028966150.1	0.0	uncharacterized protein LOC103404135
Refseq	XP_028966151.1	0.0	uncharacterized protein LOC103404135
Refseq	XP_028966153.1	0.0	uncharacterized protein LOC103404135
TrEMBL	A0A498ISW7	0.0	A0A498ISW7_MALDO; Uncharacterized protein
STRING	XP_008353366.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3012	32	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-34	G2-like family protein

Link Out ? help Back to Top
Phytozome	MDP0000196504