PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000196475
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 873aa    MW: 95671.5 Da    PI: 7.214
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000196475genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.4e-07442462526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C+ f++ GtC+ Gd C +aHg
  MDP0000196475 442 PCPEFRK-GTCRQGDDCEYAHG 462
                    8******.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002042.74E-10193311No hitNo description
SuperFamilySSF484033.58E-11193316IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.5E-13195314IPR020683Ankyrin repeat-containing domain
PfamPF127961.1E-6234302IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0099238268IPR002110Ankyrin repeat
PROSITE profilePS5029711.718238308IPR020683Ankyrin repeat-containing domain
SMARTSM002482.4273305IPR002110Ankyrin repeat
PROSITE profilePS500889.912273308IPR002110Ankyrin repeat
SMARTSM003564.1E-5437463IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.925442464IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-4442462IPR000571Zinc finger, CCCH-type
SMARTSM0035631472495IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.944472496IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 873 aa     Download sequence    Send to blast
MILFTSSLKR QNLAXVMKQE RNESEGSRKS IXPLSFVDGS KNSKAAVNXD YHPEPITSPT  60
VSTTHANRQI IDLTKRIGSF PSRITDGGGI ATSFVKTNTR RAVTVPESAH IALVWSVXQD  120
RRHAAIRYSV KRGGGRSWVF FLSNSESSFS FVYHFSAAEE TVLRSMCSGS KTKPSSTDMV  180
MEHEKQEGML YSFSILLELA ACDDLEGLKR AVEEEGHDVD EASYWYGRLI GSKKLGXEER  240
TPLMIAAMFG SKNVLNYILQ LCIVNVNRAC GSDRATALHC AVAGGSAALA EVVKLLLAAS  300
ADSSALDANG NQAGDLITSA YGSSFNLRKK ALEGMLKGVP SIDEPFDFSE QMINETEGQE  360
QKEITTPRAS KDGTERKEYP VDLSLPDIKN GIYSTDEFRM YTFKVKPCSR AYSHDWTECP  420
FVHPGENARR RDPRKYHYSC VPCPEFRKGT CRQGDDCEYA HGIFECWLHP AQYRTRLCKD  480
ETGCTRRVCF FAHKPEELRP LYASTGSAVP SPRSFSASGA SLDMGSITPL SLNSPSMMIP  540
PTSTPPMTPT GPSSPRSGFM WQNNPNFAPP TLQLPGSRLK STLSARDMDF DIEMLSLEKD  600
RRRQQRLIDE ISGSPSNWNN GLSPASPFSA SGNRTGELNS LGGVNPTNLD DIFGSVXPAI  660
LPQFNGLSRD STASQLHSPT GMRQNMNLQA RPSYSASLSS SPGRASSMFG VDASSAAAVF  720
SSRSAAFANR SQSFIERSAG NRNTGVSSSA DFGTLKPSNL SDWGSPGGKL DWGMQGEELN  780
KLRKSASFGI RSNGSSFPTA SSTMPTHVDE PDVSWVQSLV KDGPQPLQQR GQFGFEDQQQ  840
QQQQQQHNPN NGGPEMLPAW VEQLYFEQEQ MVA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.28430.0bud| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008355011.20.0zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A498KA480.0A0A498KA48_MALDO; Uncharacterized protein
STRINGXP_008355011.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein