PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000196475 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 873aa MW: 95671.5 Da PI: 7.214 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.9 | 6.4e-07 | 442 | 462 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd C +aHg MDP0000196475 442 PCPEFRK-GTCRQGDDCEYAHG 462 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00204 | 2.74E-10 | 193 | 311 | No hit | No description |
SuperFamily | SSF48403 | 3.58E-11 | 193 | 316 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.5E-13 | 195 | 314 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.1E-6 | 234 | 302 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0099 | 238 | 268 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 11.718 | 238 | 308 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 2.4 | 273 | 305 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 9.912 | 273 | 308 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.1E-5 | 437 | 463 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.925 | 442 | 464 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-4 | 442 | 462 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 31 | 472 | 495 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.944 | 472 | 496 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 873 aa Download sequence Send to blast |
MILFTSSLKR QNLAXVMKQE RNESEGSRKS IXPLSFVDGS KNSKAAVNXD YHPEPITSPT 60 VSTTHANRQI IDLTKRIGSF PSRITDGGGI ATSFVKTNTR RAVTVPESAH IALVWSVXQD 120 RRHAAIRYSV KRGGGRSWVF FLSNSESSFS FVYHFSAAEE TVLRSMCSGS KTKPSSTDMV 180 MEHEKQEGML YSFSILLELA ACDDLEGLKR AVEEEGHDVD EASYWYGRLI GSKKLGXEER 240 TPLMIAAMFG SKNVLNYILQ LCIVNVNRAC GSDRATALHC AVAGGSAALA EVVKLLLAAS 300 ADSSALDANG NQAGDLITSA YGSSFNLRKK ALEGMLKGVP SIDEPFDFSE QMINETEGQE 360 QKEITTPRAS KDGTERKEYP VDLSLPDIKN GIYSTDEFRM YTFKVKPCSR AYSHDWTECP 420 FVHPGENARR RDPRKYHYSC VPCPEFRKGT CRQGDDCEYA HGIFECWLHP AQYRTRLCKD 480 ETGCTRRVCF FAHKPEELRP LYASTGSAVP SPRSFSASGA SLDMGSITPL SLNSPSMMIP 540 PTSTPPMTPT GPSSPRSGFM WQNNPNFAPP TLQLPGSRLK STLSARDMDF DIEMLSLEKD 600 RRRQQRLIDE ISGSPSNWNN GLSPASPFSA SGNRTGELNS LGGVNPTNLD DIFGSVXPAI 660 LPQFNGLSRD STASQLHSPT GMRQNMNLQA RPSYSASLSS SPGRASSMFG VDASSAAAVF 720 SSRSAAFANR SQSFIERSAG NRNTGVSSSA DFGTLKPSNL SDWGSPGGKL DWGMQGEELN 780 KLRKSASFGI RSNGSSFPTA SSTMPTHVDE PDVSWVQSLV KDGPQPLQQR GQFGFEDQQQ 840 QQQQQQHNPN NGGPEMLPAW VEQLYFEQEQ MVA |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.2843 | 0.0 | bud| fruit| leaf| root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008355011.2 | 0.0 | zinc finger CCCH domain-containing protein 66-like | ||||
Swissprot | Q9LUZ4 | 0.0 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A498KA48 | 0.0 | A0A498KA48_MALDO; Uncharacterized protein | ||||
STRING | XP_008355011.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1796 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58620.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000196475 |