PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000196054
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 354aa    MW: 40169.6 Da    PI: 7.9998
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000196054genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.2e-07160181526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C+ f+ tG+C+ GdrC +aHg
  MDP0000196054 160 ICPAFRSTGYCRKGDRCECAHG 181
                    7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.1E-4155182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.779155183IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5155186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-5160184IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-6160181IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-7188221IPR000571Zinc finger, CCCH-type
SMARTSM003560.8191216IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.498191217IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAGSTPSCRI AISVQISAVK QGQPPKQPQD LESKPLTPAP QPPCPGFDAL QAIPLITYTC  60
GSPCIEAMMQ GVHPGYYYQL VDLSVYYSGL LRSPVQYQCQ YHDPMIDNAI FGSDEFRMYA  120
YKVKRCQRMG AHDWTECPYA HRGEKAQRRD PRKFAYAAII CPAFRSTGYC RKGDRCECAH  180
GVFEYWLHPA KYRTRACASL ENGYCPRKVC FFAHTPDELR PQHTYSGHKY YVAYDQQAGF  240
YPPYHYYQYQ NNSDLYRAAP RTPKANRGGG GVATEAPWTA AKYQTMMTNK KIVDESCLKV  300
EEFLNSLRAL KLSDYEMEYD QGEIDAACGM KSYGGGEASV SEMPQFDWIN KLLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315698.10.0zinc finger CCCH domain-containing protein 54-like
TrEMBLA0A498JMM80.0A0A498JMM8_MALDO; Uncharacterized protein
STRINGXP_008347214.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141721011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.11e-56C3H family protein