PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000194663
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 1928aa    MW: 218535 Da    PI: 6.1662
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000194663genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS362.46.2e-1112846552374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL++cA+av+s d++ a++ L+++++ +sp+gd+ qRla+yf+ +L+arl + ++  y+ l ++++s    +e l+a+++ +  sP+   s ++
  MDP0000194663 284 STLLTQCAQAVASYDQQTARERLQKIRHYSSPRGDAKQRLAHYFADGLEARLDGATTPSYSFLVSTQSS---AAEILKAFQVSVSSSPFKHTSSFV 376
                    579***************************************************999999999999998...9*********************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                    aN +I++  e+++r+HiiDf+i +G+QWp+++q L++Rp+gpp+lRiT+++ p++g   +e++eet++rL+k+Ae+++vpfe nv +a+++e++++
  MDP0000194663 377 ANGTIMKLSENATRLHIIDFGIAYGFQWPCFIQHLSERPGGPPKLRITAIELPQPGfrPTERVEETARRLKKYAERFNVPFECNV-IAQKWETIKF 471
                    *******************************************************9****************************9.7********* PP

           GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                    e+L+++++E +aVn++++l++++de+  l+s  +rd vLkl+++++P+v+++   +  ++++ F+ rf eal +ysalfd +ea++pre+e r   
  MDP0000194663 472 EDLKIDRNEPTAVNCMFRLKNIPDETEMLSSasPRDIVLKLIRKINPDVFIHGIVNGTYTAPFFASRFREALFHYSALFDIFEATVPREDEMRLLF 567
                    ************************9988877779************************************************************** PP

           GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    E+++ gr+ivnv+aceg er+er et+++W+ r  +aGFk++pl+++  kqa++l + ++ d + ++e+ +++++gWk++ L+++S W+
  MDP0000194663 568 EKAVYGRDIVNVIACEGLERVERPETYKQWQFRNVRAGFKQLPLDQELLKQARRLSKCYH-DDFWIDEDGNWMLQGWKGKILLAISIWK 655
                    *****************************************************9988888.55*************************8 PP

2GRAS353.82.6e-10897613192347
           GRAS    2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95  
                      +lL+ecAeav+s d+++a++lL+++++++sp+gd++qRla+yf+ +L+arla+  +  y  l++ +    + +e l+a+++++ ++P+ k+ h
  MDP0000194663  976 CKLLTECAEAVASYDQQAANELLKQIRQHSSPYGDSTQRLAHYFADGLEARLAGARTPSYCPLTTMH---CQATEILKAYQVYVTACPFKKMVH 1066
                     589***************************************************5555554444444...4599******************** PP

           GRAS   96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 
                     + aN++I++ +e+++r+HiiDf+ s+GlQWp+L+q+L+++++gpp+lRiT ++ p++g   +e++eet++rL+k++e+ +vpfe+nv +ak++e
  MDP0000194663 1067 FFANRTIMKTAEKATRLHIIDFGSSYGLQWPCLIQSLSEKTGGPPNLRITLIELPQPGfrPAERIEETARRLTKYCERYNVPFEYNV-LAKKWE 1159
                     *********************************************************9*****************************.6***** PP

           GRAS  188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 
                     +++le++r++++E+++Vn++++l++++de+v  +++rd+vL+l+ksl+P+++v+   +  +n++ F++rf +al ++ ++fd++ea++p+e+e+
  MDP0000194663 1160 TIRLEDFRIDRNEVTVVNCMHRLKHMPDETVMANNPRDAVLNLIKSLNPDLFVHGVVNGTYNAPAFATRFKQALFHFYTFFDMYEATVPHEDEQ 1253
                     ********************************************************************************************** PP

           GRAS  282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347 
                     r++ Er+++gr+i+nvvaceg er+er et+++W+ r  + GF+++pl+ +  k++k++ ++++ +
  MDP0000194663 1254 RMFFERAIFGRDIMNVVACEGLERVERPETYKQWQTRYARIGFNQLPLDRELLKKVKTMSKNCSTR 1319
                     *************************************************************99955 PP

3GRAS370.12.9e-113155619243372
           GRAS    3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96  
                     + L++cA+av+++d++ a++l++++ +++sp+gd+++Rla yf+ AL+ rla+s++  y+ l +++t+    +e l+a+++++  +P+ k+ ++
  MDP0000194663 1556 TMLTQCAQAVANHDQRTASELIKKIGQHSSPNGDATERLAYYFADALEVRLAGSSTPSYSPLLSTQTP---ATEILKAHQVYVTSCPFKKMLYF 1646
                     689**************************************************999999999888888...89********************* PP

           GRAS   97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 
                      aN+++ + +e+++r+HiiDf+is+G+QW +L+q L++Rp+gpp+lRiT+++ p++g   +e++eet +rL+k+Ae+++vpfe++v +a+++e+
  MDP0000194663 1647 FANRTVIKLAENATRLHIIDFGISYGFQWSCLIQRLSKRPGGPPNLRITAIELPQPGfrPTERVEETMHRLEKYAERFDVPFEYTV-IAQKWET 1739
                     ********************************************************9****************************9.7****** PP

           GRAS  189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 
                     +++e+L+v++ E+++Vn++ +l +++de+v+++s+rd+vL+l+ +++P+++++   +  +ns+ F++rf ea+ +ysal d++ea++pre+e+r
  MDP0000194663 1740 IRFEDLKVDKYEMIVVNCMRRLRHIPDETVAVSSPRDTVLNLIEKINPDLFIHGVVNGTYNSPFFVTRFREAFFHYSALSDTFEATIPREDEHR 1833
                     ********************************************************************************************** PP

           GRAS  283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372 
                      + E+++ gr+i+nv+aceg er+er et++ W+ r ++aGFk+vpl+++  k++k++l+ +   + +r++e+ +++++gWk+r ++++Sa
  MDP0000194663 1834 LMFEKAIYGRDIMNVIACEGLERVERPETYKYWQVRYHRAGFKQVPLDQELLKKVKAMLKLMRyHNDFRIDEDGHWMLQGWKGRIIIALSA 1924
                     ************************************************************9999999**********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.988257636IPR005202Transcription factor GRAS
PfamPF035142.2E-108284655IPR005202Transcription factor GRAS
PROSITE profilePS5098563.7559491326IPR005202Transcription factor GRAS
PfamPF035148.9E-1069761319IPR005202Transcription factor GRAS
PROSITE profilePS5098564.54415281905IPR005202Transcription factor GRAS
PfamPF035149.9E-11115561924IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 1928 aa     Download sequence    Send to blast
MDHESTYSIF PPTNVDHNSS DSSPPLNTGS DGDSIDPGDC SHPVLKYISD ILLEEDLEGK  60
PCMLQDCLAL QAAEKSFFDV LNPKGPPSPN QPPLSHSLEN PDDDSTPGFH SGNGTSIATK  120
TDWGFDSSET SHFQSYLVES QSDNLLGSDP LSEMQSFGHF GGVGEACKFL PNESFETIDL  180
ENSHTDPCPL GIRTLMRRPE NDGYNSTNIL KGKKNHQRED GDYPEEGRSS KQPVAFADDS  240
EPQEMFDEVL LSHGRRHFGN KQSKGSKTTR SKKQSSNTEI VDLSTLLTQC AQAVASYDQQ  300
TARERLQKIR HYSSPRGDAK QRLAHYFADG LEARLDGATT PSYSFLVSTQ SSAAEILKAF  360
QVSVSSSPFK HTSSFVANGT IMKLSENATR LHIIDFGIAY GFQWPCFIQH LSERPGGPPK  420
LRITAIELPQ PGFRPTERVE ETARRLKKYA ERFNVPFECN VIAQKWETIK FEDLKIDRNE  480
PTAVNCMFRL KNIPDETEML SSASPRDIVL KLIRKINPDV FIHGIVNGTY TAPFFASRFR  540
EALFHYSALF DIFEATVPRE DEMRLLFEKA VYGRDIVNVI ACEGLERVER PETYKQWQFR  600
NVRAGFKQLP LDQELLKQAR RLSKCYHDDF WIDEDGNWML QGWKGKILLA ISIWKIKLWW  660
ELGPQERFSV PMEGFEFGDG LNLVYSDENL ADGFVENHES TNPNFFPSNL DHPSDLSTSL  720
SPGSDAVTID TNDCNQPVLK YISEILLEED LEGKPCMLQE SLALQVAEKY FYDALNPEDP  780
PLLNQPSFSV CQSFENSDVG CHSSDGSIAS FPSSNGSISA NSGWVWDFSQ PSHGIKFLPN  840
ESCETIDLER DQLAPPCSDQ WPPGPYTLIG NLASENDGYS SINGPKGKKN HRREDGYDAE  900
EGRRNKQSAA ASDNSDLQEI YDKVLQSVNH EPDSCLHDES SKTKGNRTLQ HKEQSKGCKS  960
SRAKKQNSNP KVVDLCKLLT ECAEAVASYD QQAANELLKQ IRQHSSPYGD STQRLAHYFA  1020
DGLEARLAGA RTPSYCPLTT MHCQATEILK AYQVYVTACP FKKMVHFFAN RTIMKTAEKA  1080
TRLHIIDFGS SYGLQWPCLI QSLSEKTGGP PNLRITLIEL PQPGFRPAER IEETARRLTK  1140
YCERYNVPFE YNVLAKKWET IRLEDFRIDR NEVTVVNCMH RLKHMPDETV MANNPRDAVL  1200
NLIKSLNPDL FVHGVVNGTY NAPAFATRFK QALFHFYTFF DMYEATVPHE DEQRMFFERA  1260
IFGRDIMNVV ACEGLERVER PETYKQWQTR YARIGFNQLP LDRELLKKVK TMSKNCSTRN  1320
LVNHDSSSSQ NHVNGFQVNH EHTNPIFLPP ISDHPSDSVF SSPGSDADTI DISDCNHPVL  1380
KYISDILLEE DLEGKPCMLQ DCLTLQAAEK SFYDVLNPKG PPSSSQSPLP MYQSFENSHD  1440
DFTQCCHSSN GRVAARTHSV SSSEASHVQS WRIAIIQKKG EKKQSAASND GPEPQELFDE  1500
VLLCQDADHE FKSCFHDQYV KTDASGKLQC NKQPKVSKAA RSKTKHKNRE VVDLCTMLTQ  1560
CAQAVANHDQ RTASELIKKI GQHSSPNGDA TERLAYYFAD ALEVRLAGSS TPSYSPLLST  1620
QTPATEILKA HQVYVTSCPF KKMLYFFANR TVIKLAENAT RLHIIDFGIS YGFQWSCLIQ  1680
RLSKRPGGPP NLRITAIELP QPGFRPTERV EETMHRLEKY AERFDVPFEY TVIAQKWETI  1740
RFEDLKVDKY EMIVVNCMRR LRHIPDETVA VSSPRDTVLN LIEKINPDLF IHGVVNGTYN  1800
SPFFVTRFRE AFFHYSALSD TFEATIPRED EHRLMFEKAI YGRDIMNVIA CEGLERVERP  1860
ETYKYWQVRY HRAGFKQVPL DQELLKKVKA MLKLMRYHND FRIDEDGHWM LQGWKGRIII  1920
ALSALKPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-4426519271380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.269250.0leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008357016.10.0scarecrow-like protein 14
SwissprotQ9XE581e-171SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A498KAI20.0A0A498KAI2_MALDO; Uncharacterized protein
STRINGXP_004295969.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-159SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]