PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000194663 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | GRAS | ||||||||
Protein Properties | Length: 1928aa MW: 218535 Da PI: 6.1662 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 362.4 | 6.2e-111 | 284 | 655 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL++cA+av+s d++ a++ L+++++ +sp+gd+ qRla+yf+ +L+arl + ++ y+ l ++++s +e l+a+++ + sP+ s ++ MDP0000194663 284 STLLTQCAQAVASYDQQTARERLQKIRHYSSPRGDAKQRLAHYFADGLEARLDGATTPSYSFLVSTQSS---AAEILKAFQVSVSSSPFKHTSSFV 376 579***************************************************999999999999998...9*********************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191 aN +I++ e+++r+HiiDf+i +G+QWp+++q L++Rp+gpp+lRiT+++ p++g +e++eet++rL+k+Ae+++vpfe nv +a+++e++++ MDP0000194663 377 ANGTIMKLSENATRLHIIDFGIAYGFQWPCFIQHLSERPGGPPKLRITAIELPQPGfrPTERVEETARRLKKYAERFNVPFECNV-IAQKWETIKF 471 *******************************************************9****************************9.7********* PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 e+L+++++E +aVn++++l++++de+ l+s +rd vLkl+++++P+v+++ + ++++ F+ rf eal +ysalfd +ea++pre+e r MDP0000194663 472 EDLKIDRNEPTAVNCMFRLKNIPDETEMLSSasPRDIVLKLIRKINPDVFIHGIVNGTYTAPFFASRFREALFHYSALFDIFEATVPREDEMRLLF 567 ************************9988877779************************************************************** PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 E+++ gr+ivnv+aceg er+er et+++W+ r +aGFk++pl+++ kqa++l + ++ d + ++e+ +++++gWk++ L+++S W+ MDP0000194663 568 EKAVYGRDIVNVIACEGLERVERPETYKQWQFRNVRAGFKQLPLDQELLKQARRLSKCYH-DDFWIDEDGNWMLQGWKGKILLAISIWK 655 *****************************************************9988888.55*************************8 PP | |||||||
2 | GRAS | 353.8 | 2.6e-108 | 976 | 1319 | 2 | 347 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +lL+ecAeav+s d+++a++lL+++++++sp+gd++qRla+yf+ +L+arla+ + y l++ + + +e l+a+++++ ++P+ k+ h MDP0000194663 976 CKLLTECAEAVASYDQQAANELLKQIRQHSSPYGDSTQRLAHYFADGLEARLAGARTPSYCPLTTMH---CQATEILKAYQVYVTACPFKKMVH 1066 589***************************************************5555554444444...4599******************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 + aN++I++ +e+++r+HiiDf+ s+GlQWp+L+q+L+++++gpp+lRiT ++ p++g +e++eet++rL+k++e+ +vpfe+nv +ak++e MDP0000194663 1067 FFANRTIMKTAEKATRLHIIDFGSSYGLQWPCLIQSLSEKTGGPPNLRITLIELPQPGfrPAERIEETARRLTKYCERYNVPFEYNV-LAKKWE 1159 *********************************************************9*****************************.6***** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 +++le++r++++E+++Vn++++l++++de+v +++rd+vL+l+ksl+P+++v+ + +n++ F++rf +al ++ ++fd++ea++p+e+e+ MDP0000194663 1160 TIRLEDFRIDRNEVTVVNCMHRLKHMPDETVMANNPRDAVLNLIKSLNPDLFVHGVVNGTYNAPAFATRFKQALFHFYTFFDMYEATVPHEDEQ 1253 ********************************************************************************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347 r++ Er+++gr+i+nvvaceg er+er et+++W+ r + GF+++pl+ + k++k++ ++++ + MDP0000194663 1254 RMFFERAIFGRDIMNVVACEGLERVERPETYKQWQTRYARIGFNQLPLDRELLKKVKTMSKNCSTR 1319 *************************************************************99955 PP | |||||||
3 | GRAS | 370.1 | 2.9e-113 | 1556 | 1924 | 3 | 372 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 + L++cA+av+++d++ a++l++++ +++sp+gd+++Rla yf+ AL+ rla+s++ y+ l +++t+ +e l+a+++++ +P+ k+ ++ MDP0000194663 1556 TMLTQCAQAVANHDQRTASELIKKIGQHSSPNGDATERLAYYFADALEVRLAGSSTPSYSPLLSTQTP---ATEILKAHQVYVTSCPFKKMLYF 1646 689**************************************************999999999888888...89********************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 aN+++ + +e+++r+HiiDf+is+G+QW +L+q L++Rp+gpp+lRiT+++ p++g +e++eet +rL+k+Ae+++vpfe++v +a+++e+ MDP0000194663 1647 FANRTVIKLAENATRLHIIDFGISYGFQWSCLIQRLSKRPGGPPNLRITAIELPQPGfrPTERVEETMHRLEKYAERFDVPFEYTV-IAQKWET 1739 ********************************************************9****************************9.7****** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 +++e+L+v++ E+++Vn++ +l +++de+v+++s+rd+vL+l+ +++P+++++ + +ns+ F++rf ea+ +ysal d++ea++pre+e+r MDP0000194663 1740 IRFEDLKVDKYEMIVVNCMRRLRHIPDETVAVSSPRDTVLNLIEKINPDLFIHGVVNGTYNSPFFVTRFREAFFHYSALSDTFEATIPREDEHR 1833 ********************************************************************************************** PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372 + E+++ gr+i+nv+aceg er+er et++ W+ r ++aGFk+vpl+++ k++k++l+ + + +r++e+ +++++gWk+r ++++Sa MDP0000194663 1834 LMFEKAIYGRDIMNVIACEGLERVERPETYKYWQVRYHRAGFKQVPLDQELLKKVKAMLKLMRyHNDFRIDEDGHWMLQGWKGRIIIALSA 1924 ************************************************************9999999**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.988 | 257 | 636 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.2E-108 | 284 | 655 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 63.755 | 949 | 1326 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.9E-106 | 976 | 1319 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 64.544 | 1528 | 1905 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.9E-111 | 1556 | 1924 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 1928 aa Download sequence Send to blast |
MDHESTYSIF PPTNVDHNSS DSSPPLNTGS DGDSIDPGDC SHPVLKYISD ILLEEDLEGK 60 PCMLQDCLAL QAAEKSFFDV LNPKGPPSPN QPPLSHSLEN PDDDSTPGFH SGNGTSIATK 120 TDWGFDSSET SHFQSYLVES QSDNLLGSDP LSEMQSFGHF GGVGEACKFL PNESFETIDL 180 ENSHTDPCPL GIRTLMRRPE NDGYNSTNIL KGKKNHQRED GDYPEEGRSS KQPVAFADDS 240 EPQEMFDEVL LSHGRRHFGN KQSKGSKTTR SKKQSSNTEI VDLSTLLTQC AQAVASYDQQ 300 TARERLQKIR HYSSPRGDAK QRLAHYFADG LEARLDGATT PSYSFLVSTQ SSAAEILKAF 360 QVSVSSSPFK HTSSFVANGT IMKLSENATR LHIIDFGIAY GFQWPCFIQH LSERPGGPPK 420 LRITAIELPQ PGFRPTERVE ETARRLKKYA ERFNVPFECN VIAQKWETIK FEDLKIDRNE 480 PTAVNCMFRL KNIPDETEML SSASPRDIVL KLIRKINPDV FIHGIVNGTY TAPFFASRFR 540 EALFHYSALF DIFEATVPRE DEMRLLFEKA VYGRDIVNVI ACEGLERVER PETYKQWQFR 600 NVRAGFKQLP LDQELLKQAR RLSKCYHDDF WIDEDGNWML QGWKGKILLA ISIWKIKLWW 660 ELGPQERFSV PMEGFEFGDG LNLVYSDENL ADGFVENHES TNPNFFPSNL DHPSDLSTSL 720 SPGSDAVTID TNDCNQPVLK YISEILLEED LEGKPCMLQE SLALQVAEKY FYDALNPEDP 780 PLLNQPSFSV CQSFENSDVG CHSSDGSIAS FPSSNGSISA NSGWVWDFSQ PSHGIKFLPN 840 ESCETIDLER DQLAPPCSDQ WPPGPYTLIG NLASENDGYS SINGPKGKKN HRREDGYDAE 900 EGRRNKQSAA ASDNSDLQEI YDKVLQSVNH EPDSCLHDES SKTKGNRTLQ HKEQSKGCKS 960 SRAKKQNSNP KVVDLCKLLT ECAEAVASYD QQAANELLKQ IRQHSSPYGD STQRLAHYFA 1020 DGLEARLAGA RTPSYCPLTT MHCQATEILK AYQVYVTACP FKKMVHFFAN RTIMKTAEKA 1080 TRLHIIDFGS SYGLQWPCLI QSLSEKTGGP PNLRITLIEL PQPGFRPAER IEETARRLTK 1140 YCERYNVPFE YNVLAKKWET IRLEDFRIDR NEVTVVNCMH RLKHMPDETV MANNPRDAVL 1200 NLIKSLNPDL FVHGVVNGTY NAPAFATRFK QALFHFYTFF DMYEATVPHE DEQRMFFERA 1260 IFGRDIMNVV ACEGLERVER PETYKQWQTR YARIGFNQLP LDRELLKKVK TMSKNCSTRN 1320 LVNHDSSSSQ NHVNGFQVNH EHTNPIFLPP ISDHPSDSVF SSPGSDADTI DISDCNHPVL 1380 KYISDILLEE DLEGKPCMLQ DCLTLQAAEK SFYDVLNPKG PPSSSQSPLP MYQSFENSHD 1440 DFTQCCHSSN GRVAARTHSV SSSEASHVQS WRIAIIQKKG EKKQSAASND GPEPQELFDE 1500 VLLCQDADHE FKSCFHDQYV KTDASGKLQC NKQPKVSKAA RSKTKHKNRE VVDLCTMLTQ 1560 CAQAVANHDQ RTASELIKKI GQHSSPNGDA TERLAYYFAD ALEVRLAGSS TPSYSPLLST 1620 QTPATEILKA HQVYVTSCPF KKMLYFFANR TVIKLAENAT RLHIIDFGIS YGFQWSCLIQ 1680 RLSKRPGGPP NLRITAIELP QPGFRPTERV EETMHRLEKY AERFDVPFEY TVIAQKWETI 1740 RFEDLKVDKY EMIVVNCMRR LRHIPDETVA VSSPRDTVLN LIEKINPDLF IHGVVNGTYN 1800 SPFFVTRFRE AFFHYSALSD TFEATIPRED EHRLMFEKAI YGRDIMNVIA CEGLERVERP 1860 ETYKYWQVRY HRAGFKQVPL DQELLKKVKA MLKLMRYHND FRIDEDGHWM LQGWKGRIII 1920 ALSALKPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-44 | 265 | 1927 | 1 | 380 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.26925 | 0.0 | leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008357016.1 | 0.0 | scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 1e-171 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A498KAI2 | 0.0 | A0A498KAI2_MALDO; Uncharacterized protein | ||||
STRING | XP_004295969.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-159 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000194663 |
Publications ? help Back to Top | |||
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