PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000194661

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

GRAS

Protein Properties

Length: 683aa MW: 77700 Da PI: 5.5549

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000194661	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	355.7	7.1e-109	315	681	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++ cA+av+s d+++a++ L++++ ++sp+gd +qRla+y++++L+ rl v++ ++lp+se s ++ l+a++++ ++P++k+s++ aN MDP0000194661 315 LMTLCAQAVASYDKRNANEQLKQIRLHSSPYGDGTQRLAHYVANGLELRLGADVPSY-ASLPSSEMS---AADILKAYQTYITACPFHKMSNIYAN 406 6788*********************************************966654.467777776...9********************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 q+Il+ +e+ +r+HiiDf++ +G QWp+L+q L++R +gpp+lRiTgv+ p++g +e++e+tg+rLa+++++++vpf++nv +a+++e+++ e+ MDP0000194661 407 QTILKQAEKGTRLHIIDFGVLYGYQWPSLIQDLSKRHGGPPMLRITGVEFPQPGfrPSERVEQTGRRLANYCKRFNVPFKYNV-IATNWETIRSED 501 *************************************************9************************9.7******* PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 ++++++E ++Vn+ ++l++l d++v+ rd+vLkl++++sP+++++ + ++n++ F rf eal ++s+lf+++ea++pre+ +r +E+e+ MDP0000194661 502 IKIDRDEFTVVNCLYRLKNLRDDTVTDCP-RDTVLKLIRRISPDLFIHGIVNGSYNAPFFDIRFREALFHFSSLFNMFEATVPREDPQRLLYEQEV 596 ****************988887777.************************************************************** PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +gr++ nv+aceg +r+er et+++W+ r ++aGF++vp ++++ k++++++++ + + ++v+e+ ++++gWk+r ++S W+ MDP0000194661 597 FGRDVINVIACEGPRRVERPETYKQWQIRNKRAGFRQVPSDQEILKEIRSMVKRDYHKDFSVDEDGMWVLQGWKGRIFHAISYWK 681 **************************************************99888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.931	286	661	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.5E-106	315	681	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence Send to blast
MDTFEDELPS PTNKSVIEQV DVPADLNANP VHEFEANHDF TDHNFFPVNS DPSDNLSSLP 60 GVSTEMNFPE SSEASNAILK YIREMLMEEE EYLVNKPCML QEGLALQAAE KSLHDVLVQE 120 QNPSSSDPLL SSIHRNVEAP NEGSNHSSTG SIAAGNRVGS DWGSVQDVFE SSRAQIPNPL 180 VLSGEGEITH LAHNSSSVVE LRELQGKDVS FNSDKDGSDS SNGSWSKKSH QREDEDSLDD 240 WRRNKDPAVY ADEFELPQLF DEVLLCQGEK QESNSCSPKE SEKLQLNRKS KGSKGKKTRK 300 KKLDDNAGMV DLWTLMTLCA QAVASYDKRN ANEQLKQIRL HSSPYGDGTQ RLAHYVANGL 360 ELRLGADVPS YASLPSSEMS AADILKAYQT YITACPFHKM SNIYANQTIL KQAEKGTRLH 420 IIDFGVLYGY QWPSLIQDLS KRHGGPPMLR ITGVEFPQPG FRPSERVEQT GRRLANYCKR 480 FNVPFKYNVI ATNWETIRSE DIKIDRDEFT VVNCLYRLKN LRDDTVTDCP RDTVLKLIRR 540 ISPDLFIHGI VNGSYNAPFF DIRFREALFH FSSLFNMFEA TVPREDPQRL LYEQEVFGRD 600 VINVIACEGP RRVERPETYK QWQIRNKRAG FRQVPSDQEI LKEIRSMVKR DYHKDFSVDE 660 DGMWVLQGWK GRIFHAISYW KPV

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence Send to blast

MDTFEDELPS PTNKSVIEQV DVPADLNANP VHEFEANHDF TDHNFFPVNS DPSDNLSSLP  60
GVSTEMNFPE SSEASNAILK YIREMLMEEE EYLVNKPCML QEGLALQAAE KSLHDVLVQE  120
QNPSSSDPLL SSIHRNVEAP NEGSNHSSTG SIAAGNRVGS DWGSVQDVFE SSRAQIPNPL  180
VLSGEGEITH LAHNSSSVVE LRELQGKDVS FNSDKDGSDS SNGSWSKKSH QREDEDSLDD  240
WRRNKDPAVY ADEFELPQLF DEVLLCQGEK QESNSCSPKE SEKLQLNRKS KGSKGKKTRK  300
KKLDDNAGMV DLWTLMTLCA QAVASYDKRN ANEQLKQIRL HSSPYGDGTQ RLAHYVANGL  360
ELRLGADVPS YASLPSSEMS AADILKAYQT YITACPFHKM SNIYANQTIL KQAEKGTRLH  420
IIDFGVLYGY QWPSLIQDLS KRHGGPPMLR ITGVEFPQPG FRPSERVEQT GRRLANYCKR  480
FNVPFKYNVI ATNWETIRSE DIKIDRDEFT VVNCLYRLKN LRDDTVTDCP RDTVLKLIRR  540
ISPDLFIHGI VNGSYNAPFF DIRFREALFH FSSLFNMFEA TVPREDPQRL LYEQEVFGRD  600
VINVIACEGP RRVERPETYK QWQIRNKRAG FRQVPSDQEI LKEIRSMVKR DYHKDFSVDE  660
DGMWVLQGWK GRIFHAISYW KPV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-43	319	635	11	327	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	287	302	RKSKGSKGKKTRKKKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008357001.1	0.0	scarecrow-like protein 30
TrEMBL	A0A498KAI2	0.0	A0A498KAI2_MALDO; Uncharacterized protein
STRING	XP_008357001.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-167	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	MDP0000194661