PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000193702 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | SBP | ||||||||
Protein Properties | Length: 511aa MW: 56473.9 Da PI: 7.51 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.5 | 5e-40 | 145 | 220 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gC++dl+ k+yh+rh+vC++hsk++vv+v+g+eqrfCqqCsrfh l efD+ krsCr+rLa+hn rrrk+ MDP0000193702 145 TCQVHGCNMDLTFSKDYHKRHRVCDAHSKTAVVIVNGIEQRFCQQCSRFHLLAEFDDVKRSCRKRLAGHNLRRRKP 220 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 31.804 | 143 | 220 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 3.6E-32 | 143 | 207 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.62E-37 | 144 | 224 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-30 | 146 | 219 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MESWSFGSEG KGXLFPEEID IPTDAFSRNT RKPFLELDDK TCFNFGKESV DRVGFIDLGF 60 PDSNQGVEIL NGVVCNDSSY NSVASPSCLI SSSSSFGEGE SGSKFSGPVT ECSSMDSSMI 120 ALKLGSLXDS RAGNGTRSSY YPAPTCQVHG CNMDLTFSKD YHKRHRVCDA HSKTAVVIVN 180 GIEQRFCQQC SRFHLLAEFD DVKRSCRKRL AGHNLRRRKP LLDTLDCKPH KLIRTCQGNG 240 YMGSSXXKGT PFGFSDILPD GCILHPEYEQ AXQYGNVKSE DRSTYGQSVT PIPNRQFIPK 300 SFHHLPGLGE QFAPGTPLSG NEYSVFDTAS NAQKAFGASN SSCALSLLSA QSHNLSSHSA 360 GVQVPNPLXN QRAHHCXGQL NEKTSRVNSM ENCGRNRSYP FSKKSMGANH MESVNISDSS 420 HAADFQLHTD RAYHVSDCLS AKYCVSPERG TTFXLLQLSS HLQRVEHERN FLQDIRADSI 480 KNGVNECAGC WRQFGSSASE FQHFHRGWEK L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-26 | 146 | 219 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.2099 | 1e-176 | bud |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028951685.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A498HI74 | 0.0 | A0A498HI74_MALDO; Uncharacterized protein | ||||
STRING | XP_008339783.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 4e-44 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000193702 |