PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000192617 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | GATA | ||||||||
Protein Properties | Length: 403aa MW: 44368.2 Da PI: 5.0263 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.5 | 5.8e-16 | 209 | 245 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+ MDP0000192617 209 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 245 *******99*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 4.7E-6 | 69 | 104 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 12.609 | 69 | 104 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.0E-9 | 72 | 103 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.58 | 137 | 179 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.2E-14 | 137 | 178 | IPR010402 | CCT domain |
SMART | SM00401 | 1.1E-9 | 203 | 256 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 8.55 | 203 | 260 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.38E-11 | 207 | 254 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.5E-14 | 207 | 250 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 8.89E-15 | 208 | 251 | No hit | No description |
Pfam | PF00320 | 8.2E-14 | 209 | 245 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 209 | 236 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MAAVNPQPLQ ARPIEERGRG PIQVEDDDGD YEDGGDDGME DMEEVHVNSV SVEKCAGGGG 60 GGGGGGVVMA SRTSELTLSF EGEVYVFPAV TPEKVQXVLL LLGGRDVPTG MPTVEVSSDQ 120 NTRGVGDTPK RSNLSRRIAS LVRFREKRKE RCFDKKIRYT VRKEVAQRML RKNGQFASLK 180 QTSGASSWES TQSFLQDGTP QPETVLRRCQ HCGVSENNTP AMRRGPAGPR TLCNACGLMW 240 ANKGTLRDLS KSGRNLTVDH IEPGTLGRLS KKVDEGSNDA SVNPDEEDSQ ETAEDLTNSF 300 PMGIVSPAND EQVCLDHQIN LQPTDDDWYQ INLYPNGVLN GIILITYYNP HDKCCVDVIY 360 TTPESFPQAI PCADSTVQGE KCEVKKRALD HYVRRRYNNH ETL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 131 | DTPKRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.13919 | 0.0 | cell culture| fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028949526.1 | 0.0 | GATA transcription factor 24-like isoform X2 | ||||
TrEMBL | A0A498HUB4 | 0.0 | A0A498HUB4_MALDO; Uncharacterized protein | ||||
STRING | XP_008219237.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3319 | 33 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 2e-73 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000192617 |