PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000192297 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | G2-like | ||||||||
Protein Properties | Length: 331aa MW: 36796.5 Da PI: 4.6607 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.8 | 1.6e-30 | 63 | 117 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+WtpeLH+rFv+av+qLGG++k tPk++ ++m+++g+tl +vkSHLQkYRl MDP0000192297 63 RPRLQWTPELHTRFVDAVNQLGGPHKSTPKKVQQAMGIQGITLFQVKSHLQKYRL 117 59****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.91E-16 | 62 | 117 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-27 | 63 | 117 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-23 | 64 | 118 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.7E-9 | 65 | 116 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MVGFGCSGGD EQDFQGSFPT PIVTRSDDRV VLEGGEAAVV EXVDRETRXL QLPQDCVLKA 60 KLRPRLQWTP ELHTRFVDAV NQLGGPHKST PKKVQQAMGI QGITLFQVKS HLQKYRLGRY 120 SGKEWTEGTR ISKETSVSQD LEEGLSTSRT PLQLPQTAXM YDLLXSSIFH XNALVNLFGK 180 AGNEKTSAEI ENESAENHYP SSIFKCIILP SDELAGRQLQ LWQDAEQRYM NFAMENAHKK 240 LTEQFFGGAI AKGMLNGVSG LGTMELYPAY QMALGNSMQP SLEGHSTSHG HSEXSSVENF 300 QTHTEDDEKT EQSLDDDPAE AYLIDPDPDM E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-18 | 63 | 120 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-18 | 63 | 120 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-18 | 63 | 120 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-18 | 63 | 120 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-18 | 63 | 120 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-18 | 63 | 120 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-18 | 63 | 120 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-18 | 63 | 120 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-18 | 63 | 120 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-18 | 63 | 120 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-18 | 63 | 120 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-18 | 63 | 120 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028963943.1 | 1e-118 | protein PHR1-LIKE 3-like | ||||
TrEMBL | A0A498HES6 | 0.0 | A0A498HES6_MALDO; Uncharacterized protein | ||||
STRING | XP_008380089.1 | 1e-122 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18901 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 2e-28 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000192297 |