PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000190783
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 265aa    MW: 30084.9 Da    PI: 8.2898
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000190783genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.48e-32158240293
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                    Fl+k++++++d+e++++isws+  +sf+v+d  ef++++Lpk+Fkh+nf+SF+RQLn+YgF+kv++++         weF+++ F++g+ ++
  MDP0000190783 158 FLNKTFQMVDDPETDSIISWSDARQSFIVWDLYEFSRTLLPKHFKHNNFSSFIRQLNTYGFRKVDQDR---------WEFANERFQEGRGRS 240
                    9****************************************************************999.........********9987532 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.1E-36151237IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-49154248IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.35E-30154237IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-19158181IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-27158238IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-19196208IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340197221IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-19209221IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MTIRDTCEES FVLENNDEQN SGGRVTLSGL LNFTDGHWSC CGDERHGTAA LRTHGRPRQP  60
RYMRSPHLPA AGKELLEARC PPTLRSSRLE VVLAMQARIN LGVGGGSRDQ LAELDSSCDD  120
QTVKMSCCSI IYSSLSSSSS MDLPKPMEGL REAGPPPFLN KTFQMVDDPE TDSIISWSDA  180
RQSFIVWDLY EFSRTLLPKH FKHNNFSSFI RQLNTYGFRK VDQDRWEFAN ERFQEGRGRS  240
KMEDRLRKKR NKILQTKSGS GLPMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2213924910129Heat shock factor protein 1
5d5v_B2e-2213924910129Heat shock factor protein 1
5d5v_D2e-2213924910129Heat shock factor protein 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236248RGRSKMEDRLRKK
2243249DRLRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-49heat shock transcription factor A2